Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq14742 526 2e-144 seq9838 111 2e-19 seq90 82.4 8e-11 >seq14742 Length=52551 Score = 526 bits (582), Expect = 2e-144 Identities = 765/1066 (72%), Gaps = 21/1066 (2%) Strand=Plus/Plus Query 152356 TGGTTTGATGTCCTGGATGACTGGCTTAAGAGA-GACCGTTTCGTTTTTGTTGGTTGGTC 152414 |||||||||| | ||||||||| ||| | | |||||||| || ||||| |||||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGG-TTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTC 37817 Query 152415 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTAC 152474 || ||||||||||| || ||||||| |||| |||| |||||| ||||||| || || Sbjct 37818 AGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAAC 37877 Query 152475 TTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTT 152534 ||| | || ||||| || || || || || ||| ||| | || || ||||| Sbjct 37878 TTTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTT 37937 Query 152535 TCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTC-TCT 152593 | || || || ||||| ||||| ||| | ||||| ||| ||| || | ||| | | Sbjct 37938 CTTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTAT 37996 Query 152594 GGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCT 152652 |||| ||||| || ||||| || ||| || | ||| ||| | || || || ||| | Sbjct 37997 GGGGACCTGAAGCACAAGGTGACTTTACTC-GTTGGTGTCAATTAGGTGGTCTATGGACA 38055 Query 152653 TTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTG 152712 ||| | || | || || |||||| | |||| || || ||| | || || |||||| | Sbjct 38056 TTTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATT 38115 Query 152713 GCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 152771 || ||| ||| | | | ||||| |||||||||||||| ||||| | ||||| | || Sbjct 38116 GCTCGT-TCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGT 38174 Query 152772 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 152831 ||||||| || || | || ||||| | || ||||| | |||||||| ||||| Sbjct 38175 TTTTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAG 38234 Query 152832 TTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGAC 152891 ||| || || ||||| || ||||| ||| || | || | ||||| ||||| |||||||| Sbjct 38235 TTTTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGAC 38294 Query 152892 ATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGC 152951 || || || || || ||||||||||| |||||| |||| |||| || | | | ||| Sbjct 38295 TTTAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGC 38354 Query 152952 CATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTT 153011 ||||| |||| ||| || || || || || | | |||||||||| || ||||| || Sbjct 38355 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATT 38414 Query 153012 CAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTT 153071 | || || || || |||| ||||| || || || ||||| || || |||||||| Sbjct 38415 CCGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTT 38474 Query 153072 CTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCT 153131 |||||| || || ||||| ||||||| |||||||| |||||||| ||||| ||||| Sbjct 38475 CTGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCT 38534 Query 153132 GTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAA 153191 |||| |||||| | |||||||||| || ||||||| | |||| | ||| | || Sbjct 38535 TCTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAA 38594 Query 153192 TCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGA 153251 | | |||||||| || || || || |||||||| | || | || ||||| ||||| || Sbjct 38595 TTTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGA 38654 Query 153252 GACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGT 153311 || ||||| || || ||||| |||| || |||||| | ||||||||| |||| | Sbjct 38655 AACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCA 38714 Query 153312 TGACCAACCTCATGAGAACTTC--GTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCT 153369 |||||||| ||| |||| || || ||||||||||| ||||| || || || || ||| Sbjct 38715 AGACCAACCACAT--GAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCT 38772 Query 153370 CTGTGAT--ATACTTAGAGGGTCAAATGACCCTCTTTTTTATGTCT 153413 || | || ||| ||| | ||||| | | |||||||| ||| Sbjct 38773 CTATAATCAATATTTAAA----CAAATAA---TATTTTTTATTTCT 38811 Score = 304 bits (336), Expect = 1e-77 Identities = 276/348 (79%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 151343 GTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGT 151402 || |||||||| |||||||||||||| |||||||| ||||| ||| | ||||| |||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 151403 GTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTT 151462 || || ||||| || | ||||| |||||||||||||| | || ||||| || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 151463 CGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 151522 ||||| || || |||||||| || ||| | || ||||| ||||||||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 151523 ACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCC 151582 || |||||||| || || ||||| ||||||||||| ||| | ||||||||||||||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 151583 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 151642 |||||||| || ||||| | ||||||||| | || || ||||| || || ||||| ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 151643 TTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTC 151690 |||||||| | ||| | || |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 280 bits (310), Expect = 2e-70 Identities = 287/372 (77%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 |||||||| ||| |||| |||| | |||||| | || |||||||||||||||| | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCC 150958 ||||| || || | || |||| || | |||||| | || ||||||||||| || Sbjct 12211 ATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCATCGCTTTCATCGCTGCACCT 12152 Query 150959 CCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAAC 151018 || || || |||||||| || ||||| || ||| ||||||| | | ||||| |||||| Sbjct 12151 CCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 12092 Query 151019 ATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATC 151078 |||||||||||||||||||||||| | || |||||||| ||| | || ||||| || || Sbjct 12091 ATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAATT 12032 Query 151079 TGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTC 151138 |||||||| | ||| | ||||| ||| | |||||||||||||||| |||| | | || Sbjct 12031 TGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 11972 Query 151139 TTCCACTTCCTGATTGGTATCTA-TGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197 | ||||||| | | ||||| | |||| ||||||||||||| |||||| | |||||||| Sbjct 11971 TGCCACTTCTTCTTAGGTATTTGCTGCT-ACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 151198 CTTGGGTATGCG 151209 || |||||||| Sbjct 11912 TTTAGGTATGCG 11901 Score = 140 bits (154), Expect = 4e-28 Identities = 114/136 (84%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 151205 ATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTT 151263 |||||||| ||||| ||| || || ||||||||||||||||| ||||| | |||||| || Sbjct 10477 ATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATT 10419 Query 151264 CCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGG 151323 | || |||||||| |||| ||||||||||||||||||| ||||| | ||||| ||||| Sbjct 10418 CATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGG 10359 Query 151324 CACATTCAACTACATG 151339 || ||||||| |||| Sbjct 10358 AACTTTCAACTTCATG 10343 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 151689 TCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACG 151748 ||||||||||||| || | | || ||| || || | ||||| ||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 151749 TTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 151808 | | |||||||| | ||||||||||||||||||||||||||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 151809 CTCTCGACCTTGCTGCTGCTGA 151830 | | ||| | || ||| ||| Sbjct 8165 CATTAGACTTAGCGTCTGTTGA 8144 >seq9838 Length=27918 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 152061 GGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAA 152120 |||||||| ||| || ||||| ||| ||||| || ||||| || ||||| ||||| Sbjct 23736 GGTGCATGCTCCAGCTGCGCTGGCAAGGTTGTGTCCGGCACAGTCGACCAGAGCGACCAG 23677 Query 152121 TCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATATCCA 152180 || ||| ||||||| |||||||||| || |||||||||||||| || ||||| || Sbjct 23676 TCCTTCCTGGATGACGACCAGATTGGCAACGGCTTCGTGCTGACCTGCGTCGCATACCCC 23617 Query 152181 ACTTCTGATGTCACCCTCATGACTGAACAAGAGGAGTCGCTCTACT 152226 || |||||||||| || ||| | | |||||| | || |||| Sbjct 23616 ACCAGTGATGTCACCATCGAGACCCACAAGGAGGAGGCCCTGTACT 23571 >seq90 Length=1616 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/157 (71%), Gaps = 11/157 (7%) Strand=Plus/Minus Query 9700 CCCGTAGCTCAGTGG--TAGAGCAGGGCTTTTGTAAAGCTCAGGTCGCAAGTTCAAATCT 9757 || |||||||||| | |||||| | | ||| | | ||||| |||||| ||||| Sbjct 1415 CCTGTAGCTCAGTCGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCAGAAGTTCGAATCT 1356 Query 9758 TGTCAGGGGCTCCTT---------GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGC 9808 | ||||| | || | |||| ||||||||| ||| ||||| |||||||||| Sbjct 1355 TCTCAGGCCCACCATTACCTTTACGGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGC 1296 Query 9809 AAGCAGGATGTCAGCGGTTCGAGTCCGCTATTCTCCA 9845 ||||||| |||| |||||||| ||| || ||||| Sbjct 1295 AAGCAGGGGGTCATCGGTTCGATCCCGATAGGCTCCA 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549510929707000