Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq12362 138 4e-28 seq5405 111 5e-20 seq11065 105 2e-18 seq14914 98.7 3e-16 >seq12362 Length=960 Score = 138 bits (152), Expect = 4e-28 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 31459 GTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGTAGCGATC 31518 ||||||||| |||||| || |||||||| | || ||| || ||||| | |||||| | Sbjct 219 GTCGAGCATCGTCAGCACCGAGTTGAAGCCCTGCAGCACGACCTCGGTCGAGTAGCGCTT 160 Query 31519 ACCACCG-TCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTTCG 31577 ||| || | || | ||||| |||||| ||||||| |||||||| || ||||||| Sbjct 159 CTGGCCGCTCTG-GTCTTCCCACTCGCGGGTCTGCAGCTGGCCCTCGACATAGACCTTCG 101 Query 31578 ATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGACGC 31637 | ||||| |||| | |||||| |||||| ||| || ||| |||||| |||||||| Sbjct 100 AGCCCTTGCGCAGGAACTGCTCGGCGACCTTGCAGAGGCCCTCGTTGAAGATGACGACGC 41 Query 31638 TATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCG 31677 ||||||||||| ||| ||| || ||||||| ||| Sbjct 40 GGTGCCACTCGGTCTTTTCCCGGCGCTCCCCGCTGTTGCG 1 >seq5405 Length=5084 Score = 111 bits (122), Expect = 5e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31660 GCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGAT 31719 ||| |||||||||| |||||||||||||||||| || || || ||||| ||| ||||||| Sbjct 11 GCGCTCGCCGCTGTTGCGGTCGCGCCAGCTTTCCGAGGTGGCGAGGCGCAGGTTGGCGAT 70 Query 31720 GCTACCCCCGGCTTGTGTCTTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAAT 31779 | ||| | || || ||||| || |||||||| ||||| | ||||| || || Sbjct 71 CGGCCGGCCGTCCTGGGTGCGGCGGATCTCGGGATCGGCCCCGAGGTTGCCGACGAGGAT 130 Query 31780 GACTTTGTTGACGCTACCGGCCAT 31803 || ||||||||||| || ||||| Sbjct 131 CACCTTGTTGACGCTGCCCGCCAT 154 >seq11065 Length=7629 Score = 105 bits (116), Expect = 2e-18 Identities = 207/304 (68%), Gaps = 13/304 (4%) Strand=Plus/Minus Query 20463 GAAATCTCCTGGTGCGGCGCGTTCGTCGGCATGGTCGTTGCCACGGCAC-----TGCCGA 20517 || ||| ||||||||||| ||||||| | | |||| |||| | ||||| Sbjct 5719 GACATCCCCTGGTGCGGCCTTTTCGTCGCC-----CATTGCATCGGCTCCCAGCTGCCGG 5665 Query 20518 AAGAGCCGATGCCAGCGAATCCACTCGGCTCTCGCAACTGGCTGAAATTCGGCAAGCCGC 20577 | || | |||| | ||||| |||||| |||||| ||||||||| ||||| || | Sbjct 5664 ACGAATCCCTGCCGGTCAATCCGCTCGGCGCTCGCAGCTGGCTGAAGTTCGGTGTTCC-C 5606 Query 20578 TGGACGAACCACAGATCGGCGCCATCGCCGTCTTCTGGCGCGGCTCAAAAGATGGTTGGC 20637 || ||| |||||| ||||| ||| |||||||||||| | || || | || ||| Sbjct 5605 TG--CGAGCCACAGCCGGGCGCAATCCTCGTCTTCTGGCGGGAATCGAAGGCCGGGTGGA 5548 Query 20638 AGGGCCACGTCGGTATCGTCGTCGGCCACGACAAGACACATCTGCATATCCTTGGCGGCA 20697 ||||||| ||||| || || | || | || |||| | || |||| ||||||| Sbjct 5547 AGGGCCATGTCGGCTTCTACGCCAGCGAACACCAGACGAGCTTCCACGTCCTCGGCGGCA 5488 Query 20698 ACCAGTCCGATTCCGTCAGTGTCGCGCGCATCGCGAAAACTCGACTGCTCGGCTATCGCT 20757 ||||| | | ||||| |||| ||| ||| | ||||||||||||| || | Sbjct 5487 ACCAGAGCAACAGCGTCAACATCGCAAAGGTCGAGAAGAGTCGACTGCTCGGCGCGCGGT 5428 Query 20758 GGCC 20761 |||| Sbjct 5427 GGCC 5424 >seq14914 Length=1627 Score = 98.7 bits (108), Expect = 3e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 31611 CGAGACCTTCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGC 31670 |||| |||||| |||||| ||||| | ||||| ||||| |||| ||| |||||| Sbjct 8 CGAGGCCTTCGTTGAAGATCGCGACGGTGTGCCATTCGGTCTTTTCCTGGCGCTCGCCGG 67 Query 31671 TGTCGCGGTCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGG 31730 ||| |||||| ||| | ||| || || | ||| ||| || || | || ||| Sbjct 68 TGTTGCGGTCCTTCCACGTCTCGCTGGTGGCGATGCGCAGGTTGCAGACCTTGCCGCCGT 127 Query 31731 CTTGTGTCTTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGA 31790 || | | |||| ||||||||||||||| |||| |||||| || ||||| ||||||| Sbjct 128 TCTGGAACGTGCGGACTTCCGGATCGGCGCCCAGATTGCCGATCAGCATGACCTTGTTGA 187 Query 31791 CGCTACCGGCCATC 31804 ||| |||||| Sbjct 188 GCGAACCCGCCATC 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169772083390800