Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq334 114 1e-20 seq3654 95.1 1e-14 seq11472 93.3 4e-14 >seq334 Length=28022 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || || || || || || | Sbjct 27643 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCAGC 27702 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || || || || Sbjct 27703 GATACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 27762 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || |||||||||||| | | | || |||| || ||| Sbjct 27763 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 27822 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || ||||| || |||||||||| ||||||| ||| Sbjct 27823 ATCCAGAAGGAGTCCACACTTCATCTGGTGTTGCGCCTGCGCGGTGGC 27870 >seq3654 Length=3311 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || || | |||||||||||| || || ||| | |||| || ||||| || | Sbjct 919 AATGGATGCCAAGTTGCACACCGCAGTCTCATCTGGGCTGGTGTACTCCACAATCTCAGT 978 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 |||| || || |||||||| || || | || || || |||||||| ||||| ||||| Sbjct 979 GCACAGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCAAGC 1038 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTC 139244 ||| ||||| ||||| || || | || ||||| | |||| ||| Sbjct 1039 ATCCTTGTACAGCATGTAGGGGTTTCCTGTTTCAATCTGTGCCTC 1083 >seq11472 Length=8128 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| || || ||||| || ||||| || || || ||| ||||||| || || || Sbjct 5016 AAGATCCAGGATAAGGAAGGGATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAG 5075 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | | |||| || ||||| || ||||| || || || || Sbjct 5076 CAGCTGGAGGATGGCCGCACCCTTGCAGACTACAACATCCAGAAGGAGTCCACCCTGCAT 5135 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| |||| |||| |||||| Sbjct 5136 CTGGTGCTGCGTCTGCGTGGAGGC 5159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/129 (77%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCG 24862 ||| || ||||| || || || |||||||||||||| || || |||||||||||| ||| Sbjct 5473 AGGTATCCCTCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCG 5532 Query 24863 AGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTG 24922 | | || |||| |||||||| || ||||| || || || || ||||| |||| || Sbjct 5533 -CACTCTTG-CAGACTATAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGTCTG 5590 Query 24923 CGCGGAGGC 24931 || |||||| Sbjct 5591 CGTGGAGGC 5599 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCG 24862 ||| || ||||| || || || ||| |||||||||| || || |||||||||||| ||| Sbjct 6827 AGGTATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCG 6886 Query 24863 AGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTG 24922 | | || |||| || ||||| || ||||| || || || || |||||||||| || Sbjct 6887 -CACTCTTG-CAGACTACAACATCCAGAAGGAGTCTACCCTGCATCTGGTGTTGCGTCTG 6944 Query 24923 CGCGGAGG 24930 || ||||| Sbjct 6945 CGTGGAGG 6952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449806355143000