Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq14182 116 2e-21 seq334 114 8e-21 seq11472 98.7 6e-16 seq7244 89.7 3e-13 >seq14182 Length=2243 Score = 116 bits (128), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 ||||| || | ||| ||||||||| ||||| ||||| | || |||| |||| ||| Sbjct 583 ACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCATCTTCC 642 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| |||||||||||||| || |||||||| | || | ||||||||||| | Sbjct 643 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGA 702 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || ||||| || || || | || || ||| || || | || ||||||| Sbjct 703 ATCTTGCTCTTGAC--ATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGATGGTCT 760 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || ||||| |||||||| |||||| Sbjct 761 TGCCAGTCAGTGTCTTGACAAAGATTTGCATG 792 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | || ||||||||||||||| ||||| | |||| |||| |||| Sbjct 807 CAGCACCAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCTGCTAGGGTGCGGCCATC 866 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| |||||||| ||||| || |||||||| Sbjct 867 TTCTAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 905 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||| | || ||||||||| ||||| ||||| | ||| |||| |||| ||| Sbjct 1331 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTGCGGCCATCTTCC 1390 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || ||||| || ||||||||||| || |||||||| Sbjct 1391 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 1425 >seq334 Length=28022 Score = 114 bits (126), Expect = 8e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 ||||| |||| ||| ||||||||| ||||| ||||| | ||| |||| |||| ||| Sbjct 27851 ACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCC 27792 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || || |||||||| || |||||||| | || | ||||||||||| | Sbjct 27791 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 27732 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || ||||| || || || | || || ||| || || | || ||||||| Sbjct 27731 ATCTTGCTCTTGAC--ATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGATGGTCT 27674 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || ||||| |||||||| ||||| Sbjct 27673 TGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | || ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 27627 CAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGAGTGCGGCCATC 27568 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| || ||||||||||| ||||||||||| Sbjct 27567 TTCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTC 27529 >seq11472 Length=8128 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| ||||| || | |||| ||||||||| ||||| ||||| | Sbjct 5158 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCA 5099 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || ||||||||||| || |||||||| | || Sbjct 5098 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 5039 Query 34871 ACCCCCTCCTTGTC 34884 | ||| ||||| || Sbjct 5038 ATCCCTTCCTTATC 5025 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| ||||| || | |||| ||||||||| ||||||||||| | Sbjct 5598 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTATAGTCTGCA 5539 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || |||| |||| ||||| ||||| || || ||||||| || |||||||| Sbjct 5538 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTC 5486 >seq7244 Length=2690 Score = 89.7 bits (98), Expect = 3e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 34756 CCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCT 34815 ||| || | ||| || || || | ||| ||||||||| ||||||||||| | ||| | Sbjct 603 CCTTAAACGCAGTACAAGATGCAAGGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGT 662 Query 34816 GCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCC 34875 ||| |||| ||||| ||||| ||||| || |||| |||||||| || | || | || Sbjct 663 GCGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAAGCGTTGCTGATCCGGTGGGATGCC 722 Query 34876 CTCCTTGTC 34884 ||||||||| Sbjct 723 CTCCTTGTC 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325628396793275