Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7244 98.7 8e-16 seq11472 95.1 9e-15 seq14182 89.7 4e-13 >seq7244 Length=2690 Score = 98.7 bits (108), Expect = 8e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 29565 CCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGT 29624 ||| |||||||| || | ||| | || || || || || |||||||| || |||| ||| Sbjct 603 CCTTAAACGCAGTACAAGATGCAAGGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGT 662 Query 29625 GCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 ||| ||| || || || ||||| ||| ||||||| | |||||||||||| || || || Sbjct 663 GCGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAAGCGTTGCTGATCCGGTGGGATGCC 722 Query 29685 CTCTTTGTCTTG 29696 ||| ||||| || Sbjct 723 CTCCTTGTCCTG 734 >seq11472 Length=8128 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||||||||| ||| || ||||| || || || |||||||| || ||| Sbjct 5598 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTATAGTCTGCA 5539 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | ||||| | ||||| || || || Sbjct 5538 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGG 5479 Query 29680 ATACC 29684 ||||| Sbjct 5478 ATACC 5474 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||||||||| ||| || ||||| || || || ||||| || || ||| Sbjct 6059 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCA 6000 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || ||||||||| | |||| | ||||| || || ||| Sbjct 5999 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 5940 Query 29680 ATACC 29684 ||||| Sbjct 5939 ATACC 5935 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||||||||| ||| || ||||| || || || ||||| || || ||| Sbjct 5158 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCA 5099 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || |||||||| | |||| | ||||| || || ||| Sbjct 5098 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 5039 Query 29680 ATACCCTCTTTGTCTTG 29696 || || || || || || Sbjct 5038 ATCCCTTCCTTATCCTG 5022 >seq14182 Length=2243 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || || || | || ||||| |||| ||| || ||||| || || || ||||| || || Sbjct 562 TGGCCACCACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCT 621 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 || | ||||| ||| || || || ||||| || | |||| | ||||| || || Sbjct 622 GCCAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGA 681 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 ||||||||||| ||||| || ||| || | |||||| | || | ||||| || Sbjct 682 GGAATACCCTCCTTGTCCTG-AATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTC 740 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || |||||||| | || || ||||| || ||||| Sbjct 741 CACCTCCAGTGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385143025912725