Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq14319 217 3e-52 seq8309 156 9e-34 seq2179 149 1e-31 seq6218 89.7 1e-13 >seq14319 Length=508 Score = 217 bits (240), Expect = 3e-52 Identities = 343/483 (71%), Gaps = 14/483 (3%) Strand=Plus/Minus Query 3424 CGACCCAGCTATCGACCTGACAGGGCTGCAGCATCGTGAGCGGGAATAC-GCTGGCGCTG 3482 |||||||| ||||| | |||||||||||||||| |||||||| || | |||| Sbjct 508 CGACCCAGGAATCGATCATGCAGGGCTGCAGCATCGCCAGCGGGAACACCGACTGCGCA- 450 Query 3483 TCATCCACGAACTCGCACATCAGCAGATTGGCGAATTCCTCGGCGCTGTAGTCGCGGCGC 3542 || || | ||||| |||||||||||| |||||||| || || | | ||| || ||||| Sbjct 449 TCGTCGATGAACTGGCACATCAGCAGGTTGGCGAACTCGTCCGGCCCGTACTCCTGGCGC 390 Query 3543 AGTTCCTCGATATCGAACAGGTCACAGCCACGGCCGGCCGCATCAAGAACGGTCACGATC 3602 || || ||||| ||||| ||||| || || | | ||||||| | |||| | Sbjct 389 AGCTCGTCGATGTCGAAGAGGTCGCAACCGCCCGCCTCCGCATCCTCGATCGTCAGCACA 330 Query 3603 TGGCGCCAGATCGCGTC---CTCGCAACGCCGGCCACCCATCAGGCGCGCGTGGCTCACA 3659 || || ||||| ||| | || | |||| || | |||| ||||||||| || Sbjct 329 TGCCGGAAGATCTTGTCGGGCCCG-AGCGCC--CCGTTCTTCAGCGCCGCGTGGCTGACG 273 Query 3660 TCCAGCTGGATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGCCGGTCCAGAAG 3719 || | || || | | || || | | ||| || ||||||||||||||| Sbjct 272 TCGAAGACCCGCTTCTCGTCCTTCGGCCGCCGCCGGTTCCAGTTGTCGCCGGTCCAGAAG 213 Query 3720 TCGAAGGCTTCATGCGCCA---TGGTGGACGGCGTGCTGAAGTAGGTCTTGCGCCACTTC 3776 | |||| || ||| || || ||| || || | || ||||| || ||||||||| Sbjct 212 CCATAGGCCTCGTGCATCACGCTGCTGGGCGACGA-CAGA--TAGGTTTTCCGCCACTTC 156 Query 3777 TTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGGTCCAGAAG 3836 ||||| ||||| ||||||||| ||||| | |||||| | | ||||||||||| Sbjct 155 TTGTGGGCGGCCATCATCGAGGCGACCTTATTCAGGTCGTTGAACCGGAAGGTCCAGAAG 96 Query 3837 AACTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTGCCCAGG 3896 |||||||| ||||||||||||||||| |||||||| || || |||||||| ||||||||| Sbjct 95 AACTCGTCGAAGTAGAAATTGCCGTGATAGCCCTGCGCCGTCCGGGCGTTCGTGCCCAGG 36 Query 3897 AAG 3899 ||| Sbjct 35 AAG 33 >seq8309 Length=800 Score = 156 bits (172), Expect = 9e-34 Identities = 257/368 (70%), Gaps = 2/368 (1%) Strand=Plus/Plus Query 16476 CGCCCTGGGCCTGCGCGCGATGATCGATGAGCAGCAGGGCTGGCACAAATCGATCTCCAA 16535 |||| | ||||||||||| | | |||| ||| | ||||||||||| |||||||||| Sbjct 376 CGCCGTCGGCCTGCGCGCCAAGCTCGACGAGGAAGTCGGCTGGCACAAGACGATCTCCAA 435 Query 16536 TGTGGCCGTCGCCGGCGTGACCGGCATCAGCCGCGACGTGCACTGGGACCTGCAAGATCC 16595 || || ||| |||||| |||| | | |||| | | || | |||||| || || Sbjct 436 CGTCGCGGTCAACGGCGTCGTCGGCCTGACCCGCAAGATCAGCTTCGCCCTGCAGGACCC 495 Query 16596 GGCGACCGACGCTGGCCTGCTGAACGCCGCCGACATCACCACCCTCATCAACTCCAACGG 16655 |||||||||| ||| | ||||||||||||| | ||||| | || ||| | ||||| Sbjct 496 CTCGACCGACGCCGGCGTCCTGAACGCCGCCGGCGTCACCGCGCTGATCCGCCAGAACGG 555 Query 16656 TTACAAGTTCTGGGGTTCGCGGACCTGCAGCGACGACCCGCTGTTCGCCTTCGAGACGGC 16715 | | |||||||| | ||||||| ||||| ||| ||| ||||| | || Sbjct 556 CTTCCGCTTCTGGGGCAACCAGACCTGCTCTGACGAGCCGGCCTTCCAGTTCGAAAGCGC 615 Query 16716 CACGCGCACCGCGCAGATCCTGGCCGACACCATTGCCGAGGCGCA-GATGGTGTACATCG 16774 | | |||||||| | ||||| |||||||| ||||||| ||| |||| | ||| Sbjct 616 CGCCCGCACCGCCGACATCCTCAAGGACACCATCGCCGAGG-GCATGATGTGGGCGGTCG 674 Query 16775 ACAAGCCCGAGCATCCGTCGCTCATCCGCGACATGCTGGAGAGCATCAATGCCAAGTTCC 16834 ||||||| | || || |||||||| | |||| |||||| |||||||||| Sbjct 675 ACAAGCCGCTGACGCCCAGCCTGGCGCGCGACATCATCGAGACCATCAACGCCAAGTTCC 734 Query 16835 GCGAGCTG 16842 || ||||| Sbjct 735 GCCAGCTG 742 >seq2179 Length=647 Score = 149 bits (164), Expect = 1e-31 Identities = 281/408 (69%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 19229 CGAGGTGGTGAACCGGATCGGCGCGCTCGGCGAGGTCGCCGGCCTTGGTAGCGGCCC-GC 19287 ||| || || | |||| |||| ||||| ||||||||||||||| || ||||| | Sbjct 644 CGACGTCGTCACCCGGGTCGGGGCGCTGGGCGAGGTCGCCGGCGTTTCCT-CGGCCGAGA 586 Query 19288 TGGCGGCGCTTGGCGCCACGGTGGCCGGTATGGGCATCGAGTCGGAAGTGTCTGCCACGG 19347 | || || || ||| | ||| | | ||| ||||| || | || | | ||||| | Sbjct 585 TCGCCGCCCTGGGCTCAACGATTGTCGGCATGGGGGTCAACGAAGAGATCGCCGCCACCG 526 Query 19348 GCATCAAGAACATGCTGCTCACCCTGTCCTCGGGCGAGGCGGCAAC---GGCCCGTCAGG 19404 |||||||||||| |||| ||||| || |||| ||| || || ||||| || Sbjct 525 GCATCAAGAACACCATGCTGGCCCTGACCAAGGGCACGGCCGCCACCAAGGCCCAGAAGA 466 Query 19405 TGGCATCGTTCGACAAGCTCGGCCTGAAGGCGGGCGACCTGGCCAAGGCGATGCAGGACG 19464 ||| | ||| |||||||| |||||| |||| | |||||| ||||||| || Sbjct 465 AGGCCTATGCCGAA---CTCGGCCTCGAGGCGGTCGACGTCGCCAAGCGGATGCAGACCG 409 Query 19465 ACGCCGGCGGCGCCATTCTCGATGTGCTGGAGAAGCTCAAGCAGCT---GCCCAAGGCCG 19521 | | ||||||| | ||||||| || || || | || | |||| |||| | | Sbjct 408 ATGGCGGCGGCACGCTTCTCGACGTCATGAAGCGGATCTCGAAGCTCTCGCCCGA---CA 352 Query 19522 AGCAGGCCGCGACCATGACGCAACTGTTCGGCCGAGAATCCATCGGCGCCATCGCCCCGC 19581 |||||||| || |||| || ||||||||| ||||| ||| ||| ||||| ||| Sbjct 351 AGCAGGCCTCGGTGCTGACCCAGCTGTTCGGCGCGGAATCGGTCGCCGCGATCGCGCCGA 292 Query 19582 TGCTGACCAATCTCGACCTACTGAAGGAGAACCTGGGCAAGGTCGCCG 19629 |||| ||||| || | || || ||||||||||| |||||||| || Sbjct 291 TGCTCACCAACCTGCAGCTGCTCGAGGAGAACCTGAACAAGGTCGGCG 244 >seq6218 Length=864 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 15872 CCGACTACCACCACGGCGTACGCGTCATCGAAATCAACGGCGGCGTGCGTCCGATCCGCA 15931 |||||| ||||||||||| ||||||||||| |||| ||||||||| || ||| | |||| Sbjct 786 CCGACTTTCACCACGGCGTTCGCGTCATCGAGATCACCGGCGGCGTCCGCCCGCTGCGCA 845 Query 15932 CTGTGGCCACCGCTATC 15948 | ||||||||||| ||| Sbjct 846 CGGTGGCCACCGCCATC 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107137753590150