Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq13998 93.3 4e-14 seq14742 87.8 2e-12 seq11469 84.2 2e-11 >seq13998 Length=1233 Score = 93.3 bits (102), Expect = 4e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 148134 GCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAAC 148193 || || ||||||||| |||||||||| ||||||||||||||| || ||||||||||| | Sbjct 342 GCCGGCTTAGCTCAGATGGTAGAGCACCTGATTTGTAATCAGGGGGCCGCGGGTTCGATC 401 Query 148194 CCTGCATCCAGCACCA 148209 |||||| || |||||| Sbjct 402 CCTGCAGCCGGCACCA 417 >seq14742 Length=52551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 149999 ATTAGCTCAGTTGGT-AGAGCGCTCGACCGATAATCGAGAGGTCACTGGTTCAAGTCCAG 150057 ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| Sbjct 2345 ATTAGCTCAGTTGGTTAGAGCGCTCGCTTGATAAGCGAGAGGTCACTGGTTCAAGTCCAG 2286 Query 150058 TAT 150060 ||| Sbjct 2285 TAT 2283 >seq11469 Length=510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 148134 GCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAAC 148193 || || ||||||||| |||||||||| | | ||||||| | ||||||||||||||||| | Sbjct 214 GCCGGGTTAGCTCAGCTGGTAGAGCAGCGGTTTTGTAAACCGAAGGTCGCGGGTTCGATC 155 Query 148194 CCTGCATCCAGCACCA 148209 |||||| | |||||| Sbjct 154 CCTGCACTCGGCACCA 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485930227284000