Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq334 100 6e-16 seq11472 89.7 1e-12 >seq334 Length=28022 Score = 100 bits (110), Expect = 6e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || || || | || | | || || || || || Sbjct 27845 TGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGC 27786 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | || || || || || || || ||||| || |||||| || Sbjct 27785 TTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAATC-TT 27727 Query 82728 GCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||| || ||||| ||||| ||||| | || || |||| ||| || |||||||| || Sbjct 27726 GCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCAGT 27667 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || ||||| Sbjct 27666 CAGTGTCTTGACAAAGATTTGCAT 27643 >seq11472 Length=8128 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || |||||| || | ||||| || || || ||||| || || || || | Sbjct 5158 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCA 5099 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||| ||||| || | || || || ||||| Sbjct 5098 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 5039 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATC 82750 || ||||||||||| || ||| ||||| |||||||| ||||| || || Sbjct 5038 ATCCCTTCCTTATCCTGGATC-TTGCTCTTTACATTCTCAATGGTGTC 4992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981623095000275