Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3654 125 7e-24 seq14182 122 8e-23 seq334 116 4e-21 seq11472 96.9 3e-15 >seq3654 Length=3311 Score = 125 bits (138), Expect = 7e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 ||| || || || | |||||||| || |||||||| ||| | ||||||| || ||||| Sbjct 916 GGCAATGGATGCCAAGTTGCACACCGCAGTCTCATCTGGGCTGGTGTACTCCACAATCTC 975 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | |||||| |||||||| ||||| ||||| ||||| || ||||| |||| |||||| Sbjct 976 AGTGCACAGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCA 1035 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 || ||||||||||||||||| || || ||||| | ||| Sbjct 1036 AGCATCCTTGTACAGCATGTAGGGGTTTCCTGTTTCAATCTG 1077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 184/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 148460 CCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGG 148519 ||||||||||| |||||| | || ||| | ||||||||||| || | || | Sbjct 212 CCACATGTCGTGCTGCAGTACACCCTTGCTGACTGGGCTGCCCTCATAGGTCTCATAGGT 271 Query 148520 TCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGC 148579 || ||| || |||| | |||||| | || ||| || |||||| || ||||| Sbjct 272 ACCATGCTCCTTGGCCAATGTGCAGCTTGTCTGGAGGGCTGAGTAGTAGATGGTCTCAAA 331 Query 148580 AATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAA 148639 || | ||||||||| || ||| ||| || | |||| || |||| ||| || Sbjct 332 GATGTCTCTGTTGAGCTCTGCTGCCTCTGGGCTGTCAAAGGGCAAACCCAGCAGCAGGAA 391 Query 148640 CGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCG 148699 | ||| || || ||||| || |||| ||||| |||| ||| | |||| | |||| Sbjct 392 GGTGTCAGCCAGACCCTGGACACCCAGACCAATAGGCCTGTGGCGCACGTTGCTGCGGCG 451 Query 148700 CGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGAT 148735 || |||| || |||| |||| ||||||||| Sbjct 452 TGCTGTCTCTGTTGGGTAGTAGTTGACGTCGATGAT 487 >seq14182 Length=2243 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || ||| ||| | | | || || ||||||||||| Sbjct 595 GTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 653 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| ||||| || || |||||||| ||||| ||| Sbjct 654 GGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTT 713 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| || |||||| || | |||| ||| ||||| ||||| || Sbjct 714 GACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGATGGTCTTGCCAGTCAGTGT 773 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || || |||||| Sbjct 774 CTTGACAAAGATTTGCATG 792 >seq334 Length=28022 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || ||| ||| | | | ||||| ||||||||||| Sbjct 27839 GTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 27781 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || ||||| || |||||||| ||||| ||| Sbjct 27780 AGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTT 27721 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| || ||| || |||||| || | |||| ||| ||||| ||||| || Sbjct 27720 GACATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGTGT 27661 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 27660 CTTGACAAAGATTTGCAT 27643 >seq11472 Length=8128 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | | ||| | | | ||||| |||| Sbjct 5135 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCA-TCCTCCAGCT 5077 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || ||||||||||| ||||| || |||||||| || ||||| Sbjct 5076 GCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTATCCTGGATCT 5017 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 | ||| | | ||||| |||||| | | |||||| Sbjct 5016 TGCTCTTTACATTCTCAATGGTGTCGCTAGACTCCAC 4980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483322756219000