Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq14742 298 2e-76 >seq14742 Length=52551 Score = 298 bits (330), Expect = 2e-76 Identities = 275/348 (79%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 20009 GTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGT 20068 || |||||||| || || |||||||| |||||||| ||||||||| | ||||| |||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 20069 GTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTG 20128 ||||| ||||| ||| ||||| ||| ||||||||||| | || || || || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 ||||| ||||||||| | ||| | ||| | || ||||| || || ||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 || || ||||| ||||| || |||||||||||||||||||| |||||||||||||||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 20308 |||||||| ||||| ||||||||||| | ||||| ||||| || || || |||||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 20309 TTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTC 20356 ||| |||| || || |||| || ||||| || || | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 143 bits (158), Expect = 8e-30 Identities = 208/283 (73%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 ||||| || || ||||| || || || |||||||| || ||||| || || || || || Sbjct 12178 TTCATCATCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTT 12119 Query 19658 TCCGGTAGCCTTCTT-TATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAA 19716 || ||| | || || || |||||||||||||| || || || || ||||| | || ||| Sbjct 12118 TCTGGTT-CATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTA-CATCAA 12061 Query 19717 T-GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCT 19775 || || || |||| ||||||||||||||||||||| || | ||||| ||| | | Sbjct 12060 ACGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTAT 12001 Query 19776 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCT-ATGCTTAC 19834 ||||||| || || | |||| | | || | ||||||| || | || || | ||| ||| Sbjct 12000 ACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTGC-TAC 11942 Query 19835 ATGGGACGAGAGTGGGAACTTAGC-TATCGACTAGGAATGAGG 19876 ||||| || || |||||| ||| | || || |||| ||| || Sbjct 11941 ATGGGTCGTGAATGGGAA-TTATCTTACCGTTTAGGTATGCGG 11900 Score = 104 bits (114), Expect = 7e-18 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 19871 ATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTT 19930 ||| | ||||||||| ||| || ||||||||||| |||||||| || |||| || || Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 19931 CTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGT 19990 || |||| || | || || ||| ||||| |||| ||||||||| |||||||| || Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 19991 ACGTTCAACTACATG 20005 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148800124876050