Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq14742 266 9e-67 >seq14742 Length=52551 Score = 266 bits (294), Expect = 9e-67 Identities = 267/347 (77%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || |||||||| || || |||||||| |||||||| ||||||||| | || |||||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || || ||||| || |||| ||||||||||||||| | || || || || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 29257 CGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAG 29316 ||||| || |||||| || ||| ||| | || ||||| || || ||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 29317 ACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCT 29376 || || ||||| ||||| || || ||||||||||||||||| ||||||||||| |||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 29377 TTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 29436 ||||| || ||||| ||||||||||| | ||||| ||||| || || || |||||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 29437 TTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 29483 ||| |||| || || |||| || ||||| || || | ||||| || Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATT 8935 Score = 134 bits (148), Expect = 4e-27 Identities = 204/283 (72%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 ||||| || || ||||| || ||||| |||||||| || ||||| || || || || || Sbjct 12178 TTCATCATCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTT 12119 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 |||| | | || |||||||||||||| || || || || || || | || ||| Sbjct 12118 TCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTA-CATCAAA 12060 Query 28846 -GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTA 28904 || || || |||| ||||||||||||||||||||| || | ||||| ||| | || Sbjct 12059 CGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATA 12000 Query 28905 CAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCT--TAC 28962 |||||| || || | |||| | | || | ||||||| || | | || | |||| ||| Sbjct 11999 CAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAG--GTATTTGCTGCTAC 11942 Query 28963 ATGGGACGCGAGTGGGAACTTAGC-TATCGACTAGGAATGAGG 29004 ||||| || || |||||| ||| | || || |||| ||| || Sbjct 11941 ATGGGTCGTGAATGGGAA-TTATCTTACCGTTTAGGTATGCGG 11900 Score = 91.5 bits (100), Expect = 4e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 28999 ATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTC 29058 ||| | || |||||| ||| || ||||| ||||| || ||||| || |||| || ||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 29059 CTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGC 29118 || |||| || |||| ||||||||||| || | |||||||| ||||| || || Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 29119 ACCTTCAACTACATG 29133 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146637341663850