Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq14742 242 1e-59 >seq14742 Length=52551 Score = 242 bits (268), Expect = 1e-59 Identities = 262/347 (76%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 19228 GTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGT 19287 || ||||| ||||| || ||||| || |||||||| ||||||||| | ||||| |||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 19288 GTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTG 19347 || || || || ||| |||| ||| ||||||||||| | || || || || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 19348 CGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAG 19407 ||||||||||||||| | | |||| ||| | || ||||| || || ||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 19408 ACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCC 19467 || || |||||||| ||||| ||||| || ||||| || | || ||||| ||||| || Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 19468 TTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGG 19527 |||||||| ||||| |||| ||||| || ||||||||||| || ||||| |||||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 19528 TTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTT 19574 || | || | || | || |||||||||||||| || || || Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATT 8935 Score = 178 bits (196), Expect = 4e-40 Identities = 274/379 (72%), Gaps = 14/379 (4%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||||||||| ||| | || ||||| || |||||| | || ||||| ||||| || | Sbjct 12272 TTTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTAT 12213 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | | |||||||| | ||| ||||| || || ||||| ||||||| Sbjct 12212 CATGATCCCTACATTATTAACAGCTACT-TCTGTATTCATCATCGCTTTCATCGCTGCAC 12154 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTAT--GGAAA 18899 |||| || || || ||||| || || ||||| ||| | || || | |||| ||||| Sbjct 12153 CTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGT--TCATTATTATACGGAAA 12096 Query 18900 CAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT-GCCATCGGACTACACTTCTACC 18958 ||||||||| || || || || ||||| | || ||| || || || |||| ||||||| Sbjct 12095 CAACATCATCTCTGGTGCTGTTGTTCCTA-CATCAAACGCTATTGGTTTACATTTCTACC 12037 Query 18959 CAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTG 19018 |||||||||||||| || | ||||| ||| | |||||||| || || | |||| | Sbjct 12036 CAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAA 11977 Query 19019 TGGTCTTCCACTTCCTCATTGGCGTCTATGCT--TACATGGGACGCGAGTGGGAACTTAG 19076 | || | ||||||| || | | || | |||| |||||||| || || |||||| ||| Sbjct 11976 TCGTTTGCCACTTCTTCTTAG--GTATTTGCTGCTACATGGGTCGTGAATGGGAA-TTAT 11920 Query 19077 C-TATCGACTAGGGATGCG 19094 | || || |||| ||||| Sbjct 11919 CTTACCGTTTAGGTATGCG 11901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141121604596050