Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq5538 120 1e-22 seq3948 98.7 4e-16 >seq5538 Length=10074 Score = 120 bits (132), Expect = 1e-22 Identities = 290/426 (68%), Gaps = 16/426 (4%) Strand=Plus/Plus Query 36711 CCTCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCACG-GACTGCGCCTGC 36769 ||||||||| || |||||||| ||||||| || ||| | | | | | | |||| ||| Sbjct 3728 CCTCGGCCCCGCCGGCACCGGCAAGACCTATCTCGCCGTCGCCTATGCGGCGGCGC-TGC 3786 Query 36770 TGGAGGCCAAGGAAATCCAGCGA--CTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGA 36827 | ||| | || || |||| || || | | ||||| ||||||||||||| || Sbjct 3787 TCGAGCGCGGCGAGGTC--GCGAAGCTGATCCTGTCGCGCCCGGCCGTCGAGGCCGGCGA 3844 Query 36828 GAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGAT 36887 | |||||||| |||||| |||| ||| |||||||| | || |||||| |||| | Sbjct 3845 GCGGCTCGGCTTCCTGCCGGGCGACATGCGCGAGAAGATCGACCCCTACCTGCGCCCGCT 3904 Query 36888 GCTGGACGCGGTGATCGACCTGGT-TGGCCCGACGATGGCCAAGCGCCTGCAGGAGACCC 36946 |||||| | |||| || | |||||| || || | ||||| || | || Sbjct 3905 CTACGACGCGCTCTACGACATGATGCCGCCCGA-GAAGGTCGAGCGCGCGCTCGCCTCCG 3963 Query 36947 GCCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAAC-CTTC--AACGACACGT 37003 || | ||||| |||||||||| |||| |||||| ||||| || || | |||| | || Sbjct 3964 GCGCGATCGAGGTCGCCCCGCTCGCCTTCATGCGCGGCCGCACGCTGCAGAACGCCGCG- 4022 Query 37004 TCCTCATCGCCGACGAGATGCAGAACGCCACC-CCGCGACAGGCCGCGCTGCTGGTGACC 37062 ||||| ||||||| ||||||| ||||| ||| | ||| | || | ||||| Sbjct 4023 --ATCATCCTCGACGAGGCGCAGAACACCACCGCCGTG-CAGATGAAGATGTTCCTGACC 4079 Query 37063 CGCCTGGGCTTCGGAACGCGGGCCGTCTTGAACGGTGACCCGGCCCAGTGCGACCTCCCG 37122 ||||| ||| || || | || | | ||| |||||| ||||| ||||| ||| Sbjct 4080 CGCCTCGGCGAGGGCTCGAAGATGTTCGTCACCGGCGACCCGACCCAGGTTGACCTGCCG 4139 Query 37123 GCGGGC 37128 |||| Sbjct 4140 CAGGGC 4145 >seq3948 Length=1342 Score = 98.7 bits (108), Expect = 4e-16 Identities = 176/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 36787 CAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCC 36846 ||||| ||| || | | || ||||| |||||||| | |||||||||||||| ||||||| Sbjct 496 CAGCGCCTCCTCCTGTCGCGGCCCGCGGTCGAGGCGGGGGAGAAGCTCGGCTTCCTGCCC 437 Query 36847 GGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCGAC 36906 || | ||| | || ||| | | ||| || ||| |||| | || || | | ||| Sbjct 436 GGGGACATGAAGGACAAGGTCGATCCCTATCTGCGCCCGCTCTACGATGCTCTCAACGA- 378 Query 36907 CTGGTTG--GCCCGACGATGGCCAAGCGCCTGCA-GGAGACCCGCCAGCTCGAGATCGCC 36963 ||| || |||||| | || | |||| | ||| | || | || || |||||||||| Sbjct 377 CTGCATGCCGCCCGA-GCAGGTCGAGCGGC-GCATCGCGAGCGGCGAGATCGAGATCGCG 320 Query 36964 CCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCTCATCGCCGACGAGATG 37023 || | |||| |||||| || || || | |||| ||| ||||| ||||||| | Sbjct 319 CCCATCGCCTTCATGCGCGGGCGGACGCTGGCGGACAGCTTCATCATCCTCGACGAGGCG 260 Query 37024 CAGAACGCCAC 37034 |||||| |||| Sbjct 259 CAGAACACCAC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180761965541550