Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq14742 520 1e-142 seq6431 111 2e-19 >seq14742 Length=52551 Score = 520 bits (576), Expect = 1e-142 Identities = 729/1007 (72%), Gaps = 18/1007 (2%) Strand=Plus/Plus Query 175863 GAAGACTGGCTTC-TCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCT 175921 || |||||| | | ||| ||| | ||| | ||| | || ||||| || | || ||| | Sbjct 37774 GATGACTGGTTACGTCA-AGACCGTTTTGTATTTGTAGGTTGGTCAGGTCTTCTTCTTTT 37832 Query 175922 TCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTG 175981 || ||||||| |||| |||| || ||| ||||||| ||||||||||| || || Sbjct 37833 CCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACTTTTGTAACATCATG 37892 Query 175982 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGT 176041 |||||| |||||| | |||||||| ||| | || ||| |||||| | ||||| ||||| Sbjct 37893 GTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 37952 Query 176042 CTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAATCTC 176100 || |||||||| | ||||| ||| ||| || || | ||| ||||| |||||| | | Sbjct 37953 TTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTATGGGGACCTGAAGCAC 38011 Query 176101 AGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACG 176160 | || ||||| || ||| ||| | || || || ||| | ||| ||||| | || | Sbjct 38012 AAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACATTTATTGCTTTACATG 38071 Query 176161 GTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCA-TTGGT 176219 | | |||| | | |||||||| ||| | ||||| |||||| | || | ||| || | Sbjct 38072 GATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTGCTCGT-TCAGTTAAT 38130 Query 176220 ATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGT--CAGTGTGT 176277 | ||||| ||||| |||||||| ||| | ||||| | || ||||| |||| | Sbjct 38131 TTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTTTTTGTTTCAGT---T 38187 Query 176278 TTCTTC-TATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCA 176336 ||||| | |||||| |||| |||||| |||||| ||||| || |||||||| ||| Sbjct 38188 TTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTTTTGGTGTAGCA 38247 Query 176337 GCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTC 176396 || || || | ||| | || ||| | || || ||||| |||||||| | ||||| ||| Sbjct 38248 GCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTTTAAACCCATTC 38307 Query 176397 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTT 176456 || |||||||| || || ||| | |||| | || ||| ||| ||| || || || | | Sbjct 38308 CACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTATTCACGGTGCT 38367 Query 176457 ACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAAC-AACACCTTCACTGCGTTCGA 176515 ||||||||||| || ||| ||||||||| | || | | ||||| ||| ||| || | Sbjct 38368 ACTGTTGAAAACACATTATTTGAAGATGGTG-ACGGTGCTAACACATTCCGTGCATTTAA 38426 Query 176516 TTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAAT 176575 | || || | ||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct 38427 CCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTCTGGTCTCAAAT 38486 Query 176576 CTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGT 176635 || |||||||| || ||||| ||||||||||||||||| ||| | |||| ||||| Sbjct 38487 TTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTTCTTGTTCCTGT 38546 Query 176636 CATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTA 176695 | ||||||||| | ||| |||||| | ||||| | ||| | ||| | |||||||| Sbjct 38547 TGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAATTTACGTGCTTA 38606 Query 176696 TGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACAC 176755 ||| || || ||||| ||| | ||||| || ||||| || || |||||||||||||| Sbjct 38607 TGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAAACTTTCTACAC 38666 Query 176756 AAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACA 176815 ||| || || || | || ||||| | | || |||||||| | || |||||||| Sbjct 38667 AAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCACA 38726 Query 176816 TGA--GTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||| ||| |||||||||| |||||||| ||||| | ||||| || Sbjct 38727 TGAACGTC--TTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGC 38771 Score = 298 bits (330), Expect = 8e-76 Identities = 275/348 (79%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 174972 GTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGT 175031 || |||||||| || || ||||| | |||||||| ||||||||||| || || || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 175032 GTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTC 175091 || || ||||||||||| ||||| || ||||| |||||| | || || || || | || Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 175092 CGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAG 175151 ||||| || ||||||| || || ||| | || ||||| ||||| ||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 175152 ACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 175211 || || ||||| || || || ||||| ||||| || ||||| ||||||||||||||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 175212 TTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGG 175271 ||||||||||| || ||| | |||||||||||||| || |||||||| || ||||| ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 175272 TTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTC 175319 ||||| || | ||| |||| || |||||||||||| | || || ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 288 bits (318), Expect = 1e-72 Identities = 271/343 (79%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||| | ||| ||||||||||||||||| | ||||| |||||||| ||| | || ||| Sbjct 12244 AACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACAGCTACT 12185 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| ||||| ||||||||| | | ||| || ||||| || ||||| || || ||||| Sbjct 12184 -TCTGTATTCATCATCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGA 12126 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||||| |||||||| | | || ||||||||||||||||||||||| |||||||||| Sbjct 12125 GCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTAC 12066 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 |||||||| || ||| |||| ||||||||||| |||||||| | | | || || || Sbjct 12065 ATCAAACGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTG 12006 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | |||||||||||||||| |||| || | || | ||||||| | | ||||| | | Sbjct 12005 GTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTG 11946 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATG 174836 ||| ||||| ||||| |||||| | ||||| |||||||||||| Sbjct 11945 CTACATGGGTCGTGAATGGGAATTATCTTACCGTTTAGGTATG 11903 Score = 136 bits (150), Expect = 6e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 174834 ATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTC 174893 ||| | |||||||| |||||| |||||||| ||||||||||| ||| | ||||||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 174894 CTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGA 174953 | |||||||| |||| |||||||| ||||| || | ||||| || |||||||||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 174954 ACATTCAACTACATG 174968 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 175318 TCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATG 175377 ||||||||||||| || || | ||| |||||| | ||||| ||||| ||||| || Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 175378 TTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCC 175437 | | ||| | ||| | || |||||||| ||||| ||| | ||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 175438 CACTAGATTTGGC 175450 || |||| || || Sbjct 8165 CATTAGACTTAGC 8153 >seq6431 Length=16849 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 161469 GTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTA 161528 ||| ||| ||||| ||||| || ||||||||||| || |||||||| || || ||||| | Sbjct 2301 GTAATGGAATTCTGTTCAATCACGAGTCACCACGTCGTGGTGAGACATTTGTTACCCGCA 2242 Query 161529 AGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTA 161588 |||| || | || | | | || || | | || || ||||| | ||||| |||| Sbjct 2241 AGATCACAATGGCAGCAGCACGCATCAAGATGGGCCTGCAGGACACCGTGTACCTCGGTA 2182 Query 161589 ATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGA 161648 | || | | | || |||||||| ||||| | || ||||||||||| |||||| | Sbjct 2181 ACCTTGATGCCAAGCGTGATTGGGGACATGCCAAGGATTATGTGGAGGCAATGTGGCGCA 2122 Query 161649 TGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGT 161692 | | || ||||| | || ||||| | |||| | ||||| ||| Sbjct 2121 TCCTGCAGCAGGACAAGCCAGATGATTTTGTGGTGGCCACTGGT 2078 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 161309 CGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAA 161368 |||||||||||||||||||| |||| ||| ||| || || ||| ||||||| Sbjct 2640 CGTATCTACCAGGCATCCACATCTGAGATGTTTGGTAAAGTCCATGAGGTGCCACAGAGT 2581 Query 161369 GAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGG 161428 || |||||||| ||| |||| || || |||||||| || || || | |||| || ||| Sbjct 2580 GAGACAACACCCTTCCACCCTCGTTCACCATATGGTGTGGCCAAGGTGTATGCATTCTGG 2521 Query 161429 ATTGTAAAGAACTACAG 161445 ||| | |||||||| Sbjct 2520 ATTTTTGTCAACTACAG 2504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729781561153000