Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq14742 446 2e-120 seq5813 84.2 3e-11 >seq14742 Length=52551 Score = 446 bits (494), Expect = 2e-120 Identities = 720/1028 (70%), Gaps = 8/1028 (1%) Strand=Plus/Plus Query 179220 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 179279 ||||| |||| | || |||||| | | || || ||||| ||||| |||||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTCA 37818 Query 179280 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 179339 || || || ||| | || ||||||| |||| |||| |||||| ||||||| ||| || Sbjct 37819 GGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACT 37878 Query 179340 TTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTT 179399 ||||| || |||||||| || ||| | ||| ||| ||| | || ||| |||||| Sbjct 37879 TTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTC 37938 Query 179400 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 179458 | || |||||||| || || ||||| | ||||| ||| ||| || || | ||| || Sbjct 37939 TTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTATG 37997 Query 179459 GGGTCCTGAGTCTCAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATT 179517 ||| ||||| | || || || ||| | || ||||| ||| | || || || |||| | Sbjct 37998 GGGACCTGAAGCACAAGGTGACTTTACT-CGTTGGTGTCAATTAGGTGGTCTATGGACAT 38056 Query 179518 TCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTG 179577 | | ||| | || || | |||| | | ||||| || ||| | | ||||||||| ||| Sbjct 38057 TTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTG 38116 Query 179578 CTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTAT 179637 |||| || | | | || |||||||| |||||||| || | |||||| | || | Sbjct 38117 CTCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTTT 38176 Query 179638 TCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCT 179697 | || |||||| | || || || || ||||| || |||||||| || || | Sbjct 38177 TTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTT 38236 Query 179698 TTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGC 179757 ||||||| || || || ||| | ||| | | || | || || ||||| |||||||| Sbjct 38237 TTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTT 38296 Query 179758 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTA 179817 | ||||| ||||| |||||||| || || ||| | |||||| || || | |||||| Sbjct 38297 TAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTA 38356 Query 179818 TCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTA 179877 | || || | |||||| || || ||||| | ||||||||| || || || || || Sbjct 38357 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTCC 38416 Query 179878 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 179937 || ||| | | ||||| | ||||| ||||| || ||||| || || ||||| |||| Sbjct 38417 GTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTCT 38476 Query 179938 GGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 179997 |||| || || || || |||| || || || || || |||||||| || |||||| | Sbjct 38477 GGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTTC 38536 Query 179998 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACC 180057 |||| |||||| | ||||| |||| || ||||||| | |||| | ||| | || Sbjct 38537 TTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAATT 38596 Query 180058 TTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGA 180117 | |||||||| || ||||| || || || | ||||| || ||||| || || || | Sbjct 38597 TACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAAA 38656 Query 180118 CCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTG 180177 | |||||||| || || ||| || | |||||||| | ||||| ||| |||| | | Sbjct 38657 CTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAAG 38716 Query 180178 ATCAACCACATGA--GTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGCATT 180235 | ||||||||||| ||| | |||||||| |||||||| | || | |||||||| | Sbjct 38717 ACCAACCACATGAACGTC--TTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCT 38774 Query 180236 GTGATCAA 180243 | ||||| Sbjct 38775 ATAATCAA 38782 Score = 313 bits (346), Expect = 3e-80 Identities = 278/348 (80%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 178353 GTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGT 178412 ||||||||||| || ||||||||||| |||||||| ||||||||||| ||||| || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 178413 GTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTT 178472 ||||| ||||||||| | ||| ||||||||||||||| || || || || || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 178473 CGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 178532 |||||||| ||||||| ||||| ||| | || || || ||||| ||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 178533 ACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCA 178592 ||||||||||| || || |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 178593 TTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGG 178652 ||||||||||| |||||| | ||||||||| | || || ||||| |||||||| || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 178653 TTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTC 178700 ||||| || | || | || |||||||| ||| | || |||||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 253 bits (280), Expect = 2e-62 Identities = 283/373 (76%), Gaps = 4/373 (1%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 || || || ||| | ||| ||| | ||||| | || ||||||||||||| || | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | || |||| ||| ||||| |||||| |||| ||| ||||||| || Sbjct 12211 ATGATCCCTACATTATTAACAGCTACT-TCTGTATTCATCATCGCTTTCATCGCTGCACC 12153 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || ||||| || || ||||| || || |||||||| | | || || ||||| Sbjct 12152 TCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 12093 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||||||||||||||| |||||||| | || ||||| |||||| | || ||||| || || Sbjct 12092 CATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAAT 12033 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| |||| | ||||||||| | || ||||||||||||| |||| | | || Sbjct 12032 TTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 11973 Query 178148 ATTTCACTTCCTCATTGGTATCTA-TGCATACATGGGACGTGAGTGGGAACTTTCATACC 178206 | |||||| || | ||||| | ||| |||||||| ||||| |||||| | || |||| Sbjct 11972 TTGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTACC 11914 Query 178207 GTTTAGGTATGCG 178219 ||||||||||||| Sbjct 11913 GTTTAGGTATGCG 11901 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 178215 ATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTC 178274 ||||| || ||||| |||||| |||||||||||||| ||||| || | ||||||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 178275 CTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGT 178334 | |||||||| |||| |||||||| || ||||| | ||||| | || |||||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 178335 ACATTCAACTACATG 178349 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 178699 TCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACG 178758 ||||||||||||| || | | ||| ||||| ||||| | ||||| ||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 178759 TGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCC 178818 | |||||||||| | || |||||||| ||||||||||| || ||||||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 178819 C 178819 | Sbjct 8165 C 8165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 18754 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18813 |||| |||||| ||| ||||||||||| ||| ||||||||| ||||||| | |||||| | Sbjct 34596 TGGGATTGTAGTTCAATTGGTTAGAGCACCTCCCTGTCACGGAGGAAGTTGCGGGTTCGA 34655 Query 18814 GTCCCATCAATCCCGT 18829 ||||| ||| |||||| Sbjct 34656 GTCCCGTCAGTCCCGT 34671 >seq5813 Length=9432 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18755 GGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAG 18814 |||| ||||||||||| |||||||| ||| ||||||||||| ||| |||| |||||| || Sbjct 3804 GGGGGTGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAG 3745 Query 18815 TCCCATCAATCCCG 18828 ||| ||| ||||| Sbjct 3744 CCCCGTCACTCCCG 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605886693678000