Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq14742 495 4e-135 seq5813 84.2 3e-11 >seq14742 Length=52551 Score = 495 bits (548), Expect = 4e-135 Identities = 722/1015 (71%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 180018 TGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCT 180077 ||||| |||| | || |||||| | | ||||| ||||||||||| || ||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTCA 37818 Query 180078 GGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCT 180137 || || || ||| | || ||||||| |||| |||| |||||| ||||||| ||| || Sbjct 37819 GGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACT 37878 Query 180138 TTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 180197 ||||| || |||||||| || ||| | |||||||| ||| | |||||| |||||| Sbjct 37879 TTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTC 37938 Query 180198 CTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-TG 180256 | || |||||||| || || ||||| || ||||| ||| ||| || || | ||| || Sbjct 37939 TTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTATG 37997 Query 180257 GGGTCCTGAGTCTC-AGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATT 180315 ||| ||||| | | ||| || ||| | || ||||| ||| | || || || |||| | Sbjct 37998 GGGACCTGAAGCACAAGGTGACTTTAC-TCGTTGGTGTCAATTAGGTGGTCTATGGACAT 38056 Query 180316 TCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGG 180375 | | ||| | || || | |||| |||||||||||||| |||| || |||||| | | Sbjct 38057 TTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTG 38116 Query 180376 CACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTAT 180435 | ||| || | | ||||| |||||||||||||| ||||| | ||||| | || | Sbjct 38117 CTCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTTT 38176 Query 180436 TTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTT 180495 |||| || || | || |||||| | || || || | ||||| |||||||| || Sbjct 38177 TTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTT 38236 Query 180496 TTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCC 180555 |||| |||||||| || || | ||| | | ||| | || || ||||| |||||||| Sbjct 38237 TTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTT 38296 Query 180556 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAA 180615 | ||||| ||||| |||||||| || || ||| | |||| | || | ||| || | Sbjct 38297 TAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTA 38356 Query 180616 TCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTA 180675 | || || | ||||| || |||||| | | ||||||||| || || ||||| || Sbjct 38357 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTCC 38416 Query 180676 AGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCT 180735 |||||| | |||| |||| || ||||||||||| ||||| || || ||||| |||| Sbjct 38417 GTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTCT 38476 Query 180736 GGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 180795 |||| || || || || |||| || || || || || |||||||| || |||||| | Sbjct 38477 GGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTTC 38536 Query 180796 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACC 180855 |||| |||||| | ||||| |||| || ||||||| | |||| | ||| | || Sbjct 38537 TTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAATT 38596 Query 180856 TTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGA 180915 | |||||||| || ||||| ||||| || | ||||| || ||||| || ||||| | Sbjct 38597 TACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAAA 38656 Query 180916 CGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCG 180975 | |||||||| || || || | || |||||||| | ||||| ||| |||| | | Sbjct 38657 CTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAAG 38716 Query 180976 ATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 | |||||||| ||| | | |||||||||||||| |||| | ||||| || Sbjct 38717 ACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGC 38771 Score = 271 bits (300), Expect = 9e-68 Identities = 269/348 (77%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 179365 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 179424 || |||||||| || |||||||| ||||||||||| ||||| ||| | ||||||||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 179425 GTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTT 179484 ||||| ||||| || | |||||||| |||||||| | || ||||| || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 179485 CGTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAG 179544 |||||||| ||||| | || || ||| | || || || ||||| ||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 179545 ACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 179604 || || ||||| || || |||||||| ||||| || ||||| ||||||||||| || || Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 179605 TTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGG 179664 || |||||||| || || || ||||||||| | ||||| ||||| || || || || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 179665 TTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTC 179712 ||||||||| | || | ||||| ||||| |||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 264 bits (292), Expect = 1e-65 Identities = 267/345 (77%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 178888 AATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACT 178947 || ||||| || | |||||||||||||| | ||||| ||||| || | | || ||| Sbjct 12244 AACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACAGCTACT 12185 Query 178948 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGA 179006 ||||| |||||| | |||||| | || |||||||| || ||||| || || || ||||| Sbjct 12184 -TCTGTATTCATCATCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGA 12126 Query 179007 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAG 179066 || || |||||||| | | || ||||||||||||||||||||||||||||| || | Sbjct 12125 GCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTAC 12066 Query 179067 TTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTG 179126 |||||||| |||||| |||| |||||||| || |||||||| |||| | |||||||| Sbjct 12065 ATCAAACGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTG 12006 Query 179127 GCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGC 179186 | | || ||||||||||||| |||| | | || | ||||||| | | || || | Sbjct 12005 GTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTG 11946 Query 179187 CTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCG 179231 ||| ||||| ||||| |||||| | ||||||||| |||||||||| Sbjct 11945 CTACATGGGTCGTGAATGGGAATTATCTTACCGTTTAGGTATGCG 11901 Score = 149 bits (164), Expect = 8e-31 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 179227 ATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTC 179286 |||||||| ||||| ||| || |||||||| ||||| || ||||| | |||||||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 179287 CTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGT 179346 || |||||||| |||| ||||||||||||||||||| ||||||| | ||||||||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 179347 ACTTTTAACTACATG 179361 ||||| |||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 179711 TCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACG 179770 ||||||||||||| || | ||||| |||||| ||||| | ||||| ||||| ||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 179771 TATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 179830 | | |||||||| || ||||||||||||||||| |||||||| || |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 179831 CACTCGACCTTGCTGCTGCTGA 179852 || | ||| | || ||| ||| Sbjct 8165 CATTAGACTTAGCGTCTGTTGA 8144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 18907 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18966 |||| |||||| ||| ||||||||||| ||| ||||||||| ||||||| | |||||| | Sbjct 34596 TGGGATTGTAGTTCAATTGGTTAGAGCACCTCCCTGTCACGGAGGAAGTTGCGGGTTCGA 34655 Query 18967 GTCCCATCAATCCCGT 18982 ||||| ||| |||||| Sbjct 34656 GTCCCGTCAGTCCCGT 34671 >seq5813 Length=9432 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18908 GGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAG 18967 |||| ||||||||||| |||||||| ||| ||||||||||| ||| |||| |||||| || Sbjct 3804 GGGGGTGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAG 3745 Query 18968 TCCCATCAATCCCG 18981 ||| ||| ||||| Sbjct 3744 CCCCGTCACTCCCG 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610205817528000