Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3654 131 2e-25 seq14687 84.2 3e-11 >seq3654 Length=3311 Score = 131 bits (144), Expect = 2e-25 Identities = 200/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 ||||| || || || | ||||||||| ||||||||| ||||||| ||||||| ||| Sbjct 1878 CCAATGCCTCCTGCACTCTTTGAGATGACTGCACACTCCTTAAGAGTGTCATAGATGCCG 1937 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || ||| ||||| || ||| |||||||||||| || ||| || || || ||| Sbjct 1938 TCAATGCTGTCACCCTTGCTGCAGATCAGGAAGCAACTGCTCAGCTGTGGCCTGGGGGTA 1997 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 ||||| ||||||||||| || |||| || ||||| | | |||| | || ||| Sbjct 1998 CCAGCGTTGAAGAGGGTGGGGCTTGCATGGGTGAACCAGCGCTCAGACAGCAAGTGGTAG 2057 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 || | || ||| ||||| || | |||||||| | || || ||||||| |||| Sbjct 2058 GTTTGCACAGCAGCATCAAGGTTGCGCATATGGATGCCAAGGGCAACACGCATGAGCATG 2117 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 | ||| || || |||| |||||| || | | |||||||| Sbjct 2118 TGCTGAGGACGCTCGATGACTTTGCCATTGATTCTTAGAAGATAG 2162 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG-T 111279 ||| || ||| ||||| || |||||||| ||||| || || |||||||| | ||| | Sbjct 902 ACAAACCGTGGTAGGGCAATGGATGCCAAGTTGCACACCGCAGTCTCATC-TGGGCTGGT 960 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | ||| || || || | |||| | ||| || || |||| |||| ||||| Sbjct 961 GTACTCCACAATCTCAGTGCACAGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGTT 1020 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 || || |||||| ||||||||||| ||||||||||| | || || || |||||| Sbjct 1021 GCTTTTGCGGTTGCAAGCATCCTTGTACAGCATGTAGGGGTTTCCTGTTTCAATCTGTGC 1080 Query 111400 TTTGAGAATAGC 111411 | |||| ||| Sbjct 1081 CTCAAGAACAGC 1092 >seq14687 Length=9822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 145281 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 145340 ||||| |||||||||||||| ||||| ||||||||||||||||| || | ||||||| Sbjct 9529 AGCTCCTATAGTGTAGTGGTGATCACGTTGGACTTTGAATCCAAAGACTCCAGTTCAAAC 9470 Query 145341 CCAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 9469 CTGGGTAGGAGCTT 9456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627904627260000