Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11139 107 2e-18 seq3654 96.9 4e-15 >seq11139 Length=1709 Score = 107 bits (118), Expect = 2e-18 Identities = 251/371 (68%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || || ||||| || ||||| || || || ||| || | || |||||| || || Sbjct 545 CGGTCGAAGCGGCCCGGGCGCAGCAGCGCCGGGTCGAGCACGTCGGGGCGGTTGGTGGCG 486 Query 14123 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 14179 ||||||| | ||||||| ||||| || ||||| |||||||| | ||| || Sbjct 485 GCGATGATGATGATGCCC---TCGTTGGCCTCGAAGCCGTCCATCTCGACGAGGAGCTGG 429 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGCAG--GCATACCACCCGCACTGCGTTGCTTAC 14237 |||| || || ||||| || || |||| || || | | | | | ||| | Sbjct 428 TTGAGCGTCTGCTCGCGCTCGTCGTTCG-AGTTGCCGAGCCCGTGGCC-GCGCGAACGGC 371 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAA 14297 | |||||||| || || |||||||| ||||| || || || | ||| ||| | Sbjct 370 CCACGGCGTCGATCTCGTCGATGAAGACGATGCAGGGCGCGTTCTTCTTGGCCTGTTCGA 311 Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 14357 | || || ||||| | | || |||||||| || |||||||| || || | | | ||| Sbjct 310 ACATGTCGCGCACACGGCTTGCGCCGACACCGACGAACATCTCGACGAAGTCCGAGCCGG 251 Query 14358 AACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416 | || | || |||||| ||| | |||||||||||||| |||||||| |||||||| Sbjct 250 AG-ATGGTGAAGAAGGGCACGCCCGCCTCACCCGCGATGGCGCGGGCGAGCAGGGTCTTG 192 Query 14417 CCCGTCCCTGG 14427 || || || || Sbjct 191 CCGGTGCCGGG 181 >seq3654 Length=3311 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 ||||| || ||||| | ||||||||| || |||||| | ||| || | ||||| || Sbjct 1878 CCAATGCCTCCTGCACTCTTTGAGATGACTGCACACTCCTTAAGAGTGTCATAGATGCCG 1937 Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTA 119429 || || ||||||||| | ||| |||||||| || || || |||||||| ||| Sbjct 1938 TCAATGCTGTCACCCTTGCTGCAGATCAGGAAGCAACTGCTCAGCTGTGGCCTGGGGGTA 1997 Query 119430 CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 |||||||||||||| || || | || ||| ||||| Sbjct 1998 CCAGCGTTGAAGAGGGTGGGGCTTGCATGGGTGAAC 2033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618309773611000