Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq14182 120 9e-22 seq334 118 3e-21 seq11472 107 6e-18 seq5098 91.5 4e-13 >seq14182 Length=2243 Score = 120 bits (132), Expect = 9e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | | || ||||| || || ||||| || || || || || || | Sbjct 565 CCACCACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCC 624 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 625 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 684 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGT-TCAA 140688 || || || || |||||||| || ||| || ||||| ||||| | || | || | || | Sbjct 685 ATACCCTCCTTGTCCTGAATCTT-GCTCTTGACATTCTCAATGGTGTC-GCTGCTCTCCA 742 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| | ||||| || || ||||| || ||||| || ||||| Sbjct 743 CCTCCAGTGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 791 Score = 95.1 bits (104), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || ||||| || |||||||| || || || || || || Sbjct 1841 CATGCCACCACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 1900 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || ||| || |||||||| || || || ||||||||||| ||||| ||||| ||||| Sbjct 1901 TGCTAGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 1960 Query 140627 AGGAATTCCT 140636 || || ||| Sbjct 1961 GGGGATGCCT 1970 >seq334 Length=28022 Score = 118 bits (130), Expect = 3e-21 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || |||||||| || ||||| || || || || || || | | || || ||||| || Sbjct 27851 ACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCC 27792 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || ||||||||||| ||||| ||||| ||||| || || || || || |||||| Sbjct 27791 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 27732 Query 140649 ATTTTAGCT-TTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCT 140706 || || ||| || ||||| ||||| | ||| | || | || || || || || | |||| Sbjct 27731 ATCTT-GCTCTTGACATTCTCAATGGTATC-GCTGCTCTCCACCTCCAGAGTGATGGTCT 27674 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || ||||| || ||||| || ||||| Sbjct 27673 TGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 Score = 98.7 bits (108), Expect = 3e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| || |||||||| || || || || | Sbjct 27649 TTTGCATACCACCACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGT 27590 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || |||||||| || || || ||||| ||||| ||||||||||| | Sbjct 27589 AGTCTGCTAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGT 27530 Query 140623 CAGGAGGAATTCCT 140636 |||| || || ||| Sbjct 27529 CAGGGGGGATGCCT 27516 >seq11472 Length=8128 Score = 107 bits (118), Expect = 6e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || ||||| || || ||||| || || || || || || Sbjct 5162 CATGCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 5103 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| || || || || ||||| ||||| ||||| ||||| ||||| Sbjct 5102 TGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 5043 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAAT 140671 |||||| ||||| |||||||| || || ||| |||||||| ||||| Sbjct 5042 AGGAATCCCTTCCTTATCCTGGATCTT-GCTCTTTACATTCTCAAT 4998 Score = 86.0 bits (94), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || ||||| || |||||||| || || || || || || Sbjct 6526 CATGCCTCCACGCAGACGCAGTACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 6467 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| || || || || ||||||||||| ||||| ||||| ||||| Sbjct 6466 TGCAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 6407 Query 140627 AGGAATTCCT 140636 |||||| ||| Sbjct 6406 AGGAATACCT 6397 Score = 86.0 bits (94), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | | || ||||| || |||||||| || || || || || || Sbjct 6956 CATACCTCCACGCAGACGCAACACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 6897 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| || || || || ||||||||||| ||||| ||||| ||||| Sbjct 6896 TGCAAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 6837 Query 140627 AGGAATTCCT 140636 |||||| ||| Sbjct 6836 AGGAATACCT 6827 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || ||||| || |||||||| || || || || || || | Sbjct 7540 ACCTCCACGCAGACGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGC 7481 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||| || |||||||| || || || ||||||||||| ||||| ||||| ||||| || Sbjct 7480 AAGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 7421 Query 140630 AATTCCT 140636 || ||| Sbjct 7420 GATACCT 7414 >seq5098 Length=1551 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| || || ||||||||||| || || || || || || || ||||| || || Sbjct 810 GTGGAAATTATCGCCAATGATCAAGGAAATAGGACGACTCCCTCCTATGTTGCCTTCACG 751 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || ||||||||| | ||||||||| | ||||| || || | ||| || || | || Sbjct 750 GACACTGAGCGTCTTATTGGTGATGCAGCAAAGAACCAGGTTGCAATGAACCCTAGGAAC 691 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 || || ||||| || ||||| | |||||| Sbjct 690 ACAGTGTTTGACGCCAAGCGCATGATTGGT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514939404653675