Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3654 161 1e-34 seq5538 98.7 1e-15 seq11470 89.7 6e-13 seq9159 86.0 7e-12 >seq3654 Length=3311 Score = 161 bits (178), Expect = 1e-34 Identities = 187/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 ||||| || |||||| |||| || |||| || | |||||| || ||| | ||||| Sbjct 1330 GTACAGCTTGTTGAACTCCTCTCCCCAGACCTCTGCCAGGCCTGGAGCCTCATTGGGGCA 1389 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 | ||| |||||| | ||||| ||| || || |||||| || || |||||| || Sbjct 1390 GAACAGACTCCAGTCTTGGTCCTGCTCCACTCGCTTCATGAACAGATCATTGATCCAGAG 1449 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 | | ||| || || ||| ||| ||||||| | ||| |||||| ||||| || || Sbjct 1450 GCCATAGAACAGATCACGGGCACGGTTCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 1509 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 ||||| | |||||| |||||||| ||||| | |||||||||||| | |||||||||||| Sbjct 1510 GAAGTCAAAGATGTCTGCGTGCCAGGGCTCAATATAGATGGCGAAGGCACCCTTGCGCTT 1569 Query 79527 GCCGCCGCCCTG 79538 ||| |||||||| Sbjct 1570 GCCACCGCCCTG 1581 Score = 116 bits (128), Expect = 4e-21 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| || ||||| |||||||| | ||||||||||| | ||||| |||||||| ||| Sbjct 1581 CAGGGCGGTGGCAAGCGCAAGGGTGCCTTCGCCATCTATATTGAGCCCTGGCACGCAGAC 1522 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGAC 19585 || | || ||||| || |||||| |||||| || | ||||||| || || || Sbjct 1521 ATCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGAACCGTGCCCGTGAT 1462 Query 19586 CTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGA 19644 || ||| | |||| | ||||| || || |||||| || || ||| ||||| |||| Sbjct 1461 CTGTTCTATGGCC-TCTGGATCAATGATCTGTTCATGAAGCGAGTGGAGCAGGACCAAGA 1403 Query 19645 ATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 ||| ||| | ||||| | || || ||||| | || |||| || |||| ||| Sbjct 1402 CTGGAGTCTGTTCTGCCCCAATGAGGCTCCAGGCCTGGCAGAGGTCTGGGGAGAGGAGTT 1343 Query 19705 CAATGAGTTGTAC 19717 ||| || ||||| Sbjct 1342 CAACAAGCTGTAC 1330 Score = 100 bits (110), Expect = 3e-16 Identities = 234/347 (67%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 19978 CTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCG 20037 || ||| ||||||| || || ||||| ||||| |||| ||| || || || || Sbjct 548 CTACTTTGACTTTGAGAAGCTGGCAGAGGTTACCCGTGTCGCCACTGCAAACCTCAACCG 489 Query 20038 CGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCG 20097 | ||||||| |||| ||||| || ||| | || ||| || |||||||| | Sbjct 488 CATCATCGACGTCAACTACTACCCAACAGAGACAGCACGCCGCAGCAACGTGCGCCACAG 429 Query 20098 GCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATT 20157 ||| || | | || |||||||| ||||| ||| ||| || |||| || | | || Sbjct 428 GCCTATTGGTCTGGGTGTCCAGGGTCTGGCTGACACCTTCCTGCTGCTGGGTTTGCCCTT 369 Query 20158 CGACGATCCCA-AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGG 20216 ||| | |||| |||| |||||||||| | |||||| ||| || | ||| || | | Sbjct 368 TGAC-AGCCCAGAGGCAGCAGAGCTCAACAGAGACATCTTTGAGACCATCTACTACTCAG 310 Query 20217 CCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGT 20276 |||||| | | ||| | | ||||| ||| | || | || ||||| | |||| Sbjct 309 CCCTCCAGACAAGCTGCACATTGGCCAAGGAGCATGGTACCTATGAGACCTATGAGGGCA 250 Query 20277 CGCCCGCGTCCG--AGGGTATCCTCCAGCCGGACATGTGGGGCGTCA 20321 |||| ||| | ||||| | || |||| ||||||||||| |||| Sbjct 249 -GCCCA-GTCAGCAAGGGTGTACTGCAGCACGACATGTGGGGTGTCA 205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 185/275 (67%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||||| ||||| || || || | ||||| || | ||||| ||||| || || | | Sbjct 1759 CCTGGTCAACGTAGCGTGCAGTATCATTGAACACCCTCAGCATTGGCACAATTCCATTGC 1818 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC-GAGCAGTGGATT 79653 | |||||| || || ||| | || | || || ||||| | || || | Sbjct 1819 TGGTGCCGTTTGTGCCACGGATGTAGCTGCCAGTGGCACGGATGTTATGCACACTG-AGG 1877 Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || ||||| || | | ||| |||||| || |||||||| || || || |||||||| Sbjct 1878 CCAATGCCTCCTGCACTCTTTGAGATGACTGCACACTCCTTAAGAGTGTCATAGATGCCG 1937 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 || || ||| |||| | || ||||||||| || || |||||| || ||| Sbjct 1938 TCAATGCTGTCACCCTTGCTGCAGATCAGGAAGCAACTGCTCAGCTGTGGCCTGGGGGTA 1997 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 || |||||||||||||| || | || || ||||| Sbjct 1998 CCAGCGTTGAAGAGGGTGGGGCTTGCATGGGTGAA 2032 >seq5538 Length=10074 Score = 98.7 bits (108), Expect = 1e-15 Identities = 225/325 (69%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 166187 CTGATCCTGACGCGACCGGCCGT-GAGCGTCGAGGAGCAGCACGGGTTCCTTCCCGGCAG 166245 ||||||||| |||| |||||||| ||| | || |||| || ||| ||||| || ||| | Sbjct 3810 CTGATCCTGTCGCGCCCGGCCGTCGAG-GCCGGCGAGCGGCTCGGCTTCCTGCCGGGC-G 3867 Query 166246 TCTCGAGC-AGAAGATGGAGCCGTGGACTCGACCCATGTTCGACGCCCTGTACCGGTACA 166304 | | || ||||||| || || | || || | | |||||| || ||| ||| Sbjct 3868 ACATGCGCGAGAAGATCGACCCCTACCTGCGCCCGCTCTACGACGCGCTCTACG---ACA 3924 Query 166305 TGA-GCC--CTAAGAAGGTTCGGGATCTCA-TGGAAAATCACGTCATCGAGATCTGTCCT 166360 ||| ||| | ||||||| || | | | | | || |||||| || || Sbjct 3925 TGATGCCGCCCGAGAAGGT-CGAGCGCGCGCTCGCCTCCGGCGCGATCGAGGTCGCCCCG 3983 Query 166361 CTGGCGTACATGCGCGGTCGGACGTTCGACAACGCCTGGATTATCGGGGATGAGATGCAG 166420 || || | ||||||||| || ||| | | |||||| ||| ||| || ||| |||| Sbjct 3984 CTCGCCTTCATGCGCGGCCGCACGCTGCAGAACGCCGCGATCATCCTCGACGAGGCGCAG 4043 Query 166421 AACTCGAC-GCCGGGTCAGATGAAGATGCTTCTGACCCGGATCGGGGAAGGTTCGAAGAT 166479 ||| | || |||| | |||||||||||| | |||||||| |||| || || |||||||| Sbjct 4044 AACACCACCGCCGTG-CAGATGAAGATGTTCCTGACCCGCCTCGGCGAGGGCTCGAAGAT 4102 Query 166480 GATCGTCGCGGGTGACACGGCCCAG 166504 | ||||| | || ||| || ||||| Sbjct 4103 GTTCGTCACCGGCGACCCGACCCAG 4127 >seq11470 Length=8557 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 59973 tttGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || ||||| || || | || ||||| ||||| ||||| || |||| |||| ||| Sbjct 3802 TTCGCACAGCGCCTGCTTGCCTTTGCTTGCGTAGAAGGCATTCACTTCAGTGGCAGCTTC 3743 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || ||||| ||||||||||| ||||||||| | ||||| ||| ||| ||| |||||| Sbjct 3742 TGCGCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCAGGCTTGACATTCAGCAACGAA 3683 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 ||||| | | || | ||| | || ||| ||||| ||| Sbjct 3682 TTGATTAGCAGAGATGGGGGGTTGCACACGGACTTTGCTGTG 3641 >seq9159 Length=2836 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || ||||||||||| ||| |||||||| || ||||||||||| ||||||||| Sbjct 1111 GTGGAGGGCATCTTCTTCTCAGGCAGCTTCTGTGCCATCTTCTGGCTCAAGAAGCGTGGC 1170 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 | ||||| ||||| | ||| ||| ||||| || Sbjct 1171 TTGATGCCTGGCCTCACCTTCAGCAATGAGCTCAT 1205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548413552314000