Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9587 141 1e-28 seq7157 132 5e-26 seq3654 113 5e-20 seq11470 104 3e-17 seq9159 87.8 2e-12 seq6431 82.4 8e-11 >seq9587 Length=1384 Score = 141 bits (156), Expect = 1e-28 Identities = 246/351 (70%), Gaps = 15/351 (4%) Strand=Plus/Plus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||| | ||| |||||||| | | ||| || |||| ||| ||||||||||||||||| Sbjct 232 CTGTAGCATCCGCCACATGCCCTCGACATACTCCTTGGCGAAGCCCCAGTCGCGCTTGGC 291 Query 124613 ATCCAGGTTTCCGAGCTCGA-----TTG-GCTTGGCCGTCTTGTTCCACTCCGCCAAACC 124666 ||| || || ||||| |||| | | ||||| | |||| || | || | | Sbjct 292 ATCGAGATTGCCGAGTTCGAGGCAGTCGAGCTTGCCGAGCTTGATC---TTGGCGA--CG 346 Query 124667 CAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAAC 124724 | || || |||||||| ||||| || ||| ||||| || |||||||||||| Sbjct 347 CTGTCGGTGATCTTGCGGGTCACGAATTCGCGGCCGCGCAGCGGGCTCTCGTGGTTGAAG 406 Query 124725 AGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATAC 124784 || ||||| | | | || || ||||| |||||||||||| ||| ||||| | | Sbjct 407 AGGATGCCGCTGCTGCCGAAGATGCCGTAGCTCTCGCGGTAGTTCACCGTGATCCAGTGC 466 Query 124785 CCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG- 124843 | | ||||||| |||||||||||||| || |||||||| || || | || | || Sbjct 467 GCGTAAAGCTTGGCGACGCCATAGGGGCTGCGCGGGTAGAAGGGCGTCGTCTCGGTCTGC 526 Query 124844 GGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 |||| | ||| | ||| || ||||||||||| || | |||||| ||||| Sbjct 527 GGTATG-GCCTGTACCTTGCCGAACATCTCCGAGGTGCTCGCCTGGTAGAA 576 >seq7157 Length=7910 Score = 132 bits (146), Expect = 5e-26 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 117322 GCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGA 117380 ||| |||||||||||||| || |||| ||| ||||||||||||||||| || | || | Sbjct 6342 GCTGGCAGCATCCTTGCCTCCCTGCAA-ACGGGTACCGAATTGTCCACTGGGGTACAGCA 6284 Query 117381 GGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGC 117440 |||||||||| ||| || ||||||| || || | | ||||| || | ||| || | Sbjct 6283 GGTTCAGGTTATTGCTACCGACAAAGTCCTGTGCAAGGCCTACAATAGTGCTTTGCAGAC 6224 Query 117441 TCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCT 117500 | ||||| ||||||||||| || | ||||||| ||| || || | |||||| ||||||| Sbjct 6223 TGGCCTCTCCATGGTGATAGGCTGAGTGCTCCGACACATAACCAGACAGCTGGGCCACCT 6164 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 152043 GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAG 152102 || |||||| ||||||||||| || || || || || || |||||| ||| | || Sbjct 6345 GGGGCTGGCAGCATCCTTGCCTCCCTGCAAACGGGTACCGAATTGTCCACTGGGGTACAG 6286 Query 152103 GAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAG 152162 ||||| ||||| ||| || || || | ||| || | ||||| |||| ||||| Sbjct 6285 CAGGTTCAGGTTATTGCTACCGACAAAGTCCTGTGCAAGGCCTACAATAGTGCTTTGCAG 6226 Query 152163 ACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCAC 152222 ||| || || || |||||||| || | ||||||| | || || | || ||| ||||| Sbjct 6225 ACTGGCCTCTCCATGGTGATAGGCTGAGTGCTCCGACACATAACCAGACAGCTGGGCCAC 6166 Query 152223 CT 152224 || Sbjct 6165 CT 6164 >seq3654 Length=3311 Score = 113 bits (124), Expect = 5e-20 Identities = 180/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 53543 CAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGAC 53602 ||||| ||||| ||||||||||| | ||||||||||| | ||||| |||||||| ||| Sbjct 1581 CAGGGCGGTGGCAAGCGCAAGGGTGCCTTCGCCATCTATATTGAGCCCTGGCACGCAGAC 1522 Query 53603 ATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGAC 53662 || | || || || || ||||| ||| || || | || |||| || |||||| Sbjct 1521 ATCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGAACCGTGCCCGTGAT 1462 Query 53663 CTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGA 53721 ||||| || || || ||||| || || |||||| | |||||| ||||| | || Sbjct 1461 CTGTTCTATGGC-CTCTGGATCAATGATCTGTTCATGAAGCGAGTGGAGCAGGACCAAGA 1403 Query 53722 GTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGT 53780 ||| ||| | ||||| || ||| || ||||| ||| | |||| || ||||||| Sbjct 1402 CTGGAGTCTGTTCTGCCCCAATGAGGCTCCAGGCCTGGCAGAG-GTCTGGGGAGAGGAGT 1344 Query 53781 TTAACGAGATGTA 53793 | ||| || |||| Sbjct 1343 TCAACAAGCTGTA 1331 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 55094 TTTGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTC 55153 ||||||||||| ||||| || || || ||||| | ||| ||||| ||||| || Sbjct 544 TTTGACTTTGAGAAGCTGGCAGAGGTTACCCGTGTCGCCACTGCAAACCTCAACCGCATC 485 Query 55154 ATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCC 55213 |||||| || |||||||| || || | || ||| |||| | || ||| |||| Sbjct 484 ATCGACGTCAACTACTACCCAACAGAGACAGCACGCCGCAGCAACGTGCGCCACAGGCCT 425 Query 55214 ATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGAC 55273 || | | ||||| ||||| |||| |||| |||| || |||| || |||||||| ||| Sbjct 424 ATTGGTCTGGGTGTCCAGGGTCTGGCTGACACCTTCCTGCTGCTGGGTTTGCCCTTTGAC 365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 53288 CCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCG 53347 || ||||| |||||||||||||| || ||| || || ||||||||| | Sbjct 2017 CCCACCCTCTTCAACGCTGGTACCCCCAGGCCACAGCTGAGCAGTTGCTTCCTGATCTGC 1958 Query 53348 ATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCC 53407 | |||| |||| || ||||||||||| || || || ||||||||||| |||||| Sbjct 1957 AGCAAGGGTGACAGCATTGACGGCATCTATGACACTCTTAAGGAGTGTGCAGTCATCTCA 1898 Query 53408 AAGTGGTCGGGTGGTATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAAT 53466 ||| | | || || || || | || || | ||| ||||||| | |||| || Sbjct 1897 AAGAGTGCAGGAGGCATTGGCCT-CAGTGTGCATAACATCCGTGCCACTGGCAGCTACAT 1839 Query 53467 CAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526 | || || |||||| | | ||||||| ||||| ||||| | || ||||| | || Sbjct 1838 CCGTGGCACAAACGGCACCAGCAATGGAATTGTGCCAATGCTGAGGGTGTTCAATGATAC 1779 Query 53527 GGCCCGGTACGTCAACCAGG 53546 || || ||||| |||||| Sbjct 1778 TGCACGCTACGTTGACCAGG 1759 >seq11470 Length=8557 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 74747 CACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAG 74806 ||| ||||| ||| ||| | || |||||||||| |||||||| || || | | Sbjct 3641 CACAGCAAAGTCCGTGTGCAACCCCCCATCTCTGCTAATCAATTCGTTGCTGAATGTCAA 3700 Query 74807 GCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAA 74866 ||| ||||| | ||||||||||| | ||| ||||| || |||||| ||||||||| Sbjct 3701 GCCTGGCATCAAGCCACGCTTCTTGAGCCAGAAGATAGCGCAGAAGCTGCCACTGAAGTG 3760 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||||||| || || |||||||| | ||||| || ||||| Sbjct 3761 AATGCCTTCTACGCAAGCAAAGGCAAGCAGGCGCTGTGCGAA 3802 >seq9159 Length=2836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 |||| | || ||||||||||| || | ||||| || | ||||||||||| | || Sbjct 1227 ATGCAATCCCTCATCTCTGCTGATGAGCTCATTGCTGAAGGTGAGGCCAGGCATCAAGCC 1168 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACA 74879 ||||||||| | ||| ||||||||||||||| || |||||||||||| || ||| Sbjct 1167 ACGCTTCTTGAGCCAGAAGATGGCACAGAAGCTGCCTGAGAAGAAGATGCCCTCCACA 1110 >seq6431 Length=16849 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 158968 CCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCTCG 159027 ||||| || | |||||| || ||||| | ||| || || ||| ||||||| ||||| Sbjct 2079 CCAGTGGCCACCACAAAATCATCTGGCTTGTCCTGCTGCAGGATGCGCCACATTGCCTCC 2138 Query 159028 ACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 || ||||||| || || ||||| || ||||||||||| | ||| ||||| Sbjct 2139 ACATAATCCTTGGCATGTCCCCAATCACGCTTGGCATCAAGGTTACCGAG 2188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547105017755000