Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq334 212 7e-50 seq14182 190 2e-43 seq11472 138 1e-27 seq7157 116 4e-21 seq6431 96.9 4e-15 seq10818 93.3 5e-14 seq7244 93.3 5e-14 >seq334 Length=28022 Score = 212 bits (234), Expect = 7e-50 Identities = 183/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||| || ||||| ||||| ||| | Sbjct 27643 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCAGC 27702 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| || ||||||||||||||||| || || || |||||| Sbjct 27703 GATACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 27762 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||||| || ||||| |||||||| || Sbjct 27763 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 27822 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| |||||||| || ||||| || |||||||| Sbjct 27823 ATCCAGAAGGAGTCCACACTTCATCTGGTGTTGCGCCTGCGCGGTGG 27869 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||| ||||| || || ||||| ||||| || || |||| || Sbjct 27517 GGCATCCCCCCTGACCAGCAACGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGC 27576 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || ||||||||||| || |||| ||||| || || || ||||| || |||| || || Sbjct 27577 ACTCTAGCAGACTACAACATCCAGAAGGAGTCTACACTCCATCTGGTGCTGCGCCTGCGT 27636 Query 27628 GGTGG 27632 ||||| Sbjct 27637 GGTGG 27641 >seq14182 Length=2243 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||| || || || ||||| ||| | Sbjct 791 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACACTGGAGGTGGAGAGCAGC 732 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| || ||||||||||||||||| |||||||| |||||| Sbjct 731 GACACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 672 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| || || || |||||||| || Sbjct 671 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGGCAGACTACAAC 612 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 611 ATCCAGAAGGAGTCCACACTGCATCTGGTATTGCGTCTGCGTGGTGGCCA 562 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||||| || |||||||| ||||| || || |||| || Sbjct 1969 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 1910 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || ||||||||||| || |||| ||||| || || || ||||| || |||| || || Sbjct 1909 ACACTAGCAGACTACAACATCCAGAAGGAGTCTACACTCCATCTGGTGCTGCGCCTGCGT 1850 Query 27628 GGTGG 27632 ||||| Sbjct 1849 GGTGG 1845 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||||| ||||| || || ||||| || || |||| || Sbjct 917 GGCATCCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTAGAAGATGGCCGC 858 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 |||||||||||||| || | || ||||| || || || ||||| || |||| || || Sbjct 857 ACCCTAGCAGACTACAACATTCAGAAGGAGTCTACACTCCATCTGGTGCTGCGCCTGCGT 798 Query 27628 GGTGG 27632 ||||| Sbjct 797 GGTGG 793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||||| || || ||||| ||||| || || |||| || Sbjct 1437 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGC 1378 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || ||||||||||| || |||| ||||| || || || || || || ||||| || || Sbjct 1377 ACACTAGCAGACTACAACATCCAGAAGGAGTCTACACTCCACCTGGTGTTGCGCCTGCGT 1318 Query 27628 GGTGG 27632 ||||| Sbjct 1317 GGTGG 1313 >seq11472 Length=8128 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 |||| ||||| | || | ||||| ||| | ||| || || ||||| ||||| || | Sbjct 4978 AGGTGGAGTCTAGCGACACCATTGAGAATGTAAAGAGCAAGATCCAGGATAAGGAAGGGA 5037 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 ||||||| |||||||||||||| || || ||||| ||||| || ||||||| || |||| Sbjct 5038 TTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCC 5097 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | |||||||| || |||| ||||| ||||| || ||||| || ||||||| || || | Sbjct 5098 TTGCAGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGTCTGCGTGGAG 5157 Query 27632 G 27632 | Sbjct 5158 G 5158 Score = 122 bits (134), Expect = 1e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| |||||||||||||| || |||||||| ||||| || ||||||| ||| Sbjct 5935 GGTATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGC 5994 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| |||||||| || |||| ||||| ||||| || ||||| || ||||||| || Sbjct 5995 ACCCTTGCAGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGTCTGCGT 6054 Query 27628 GGTGG 27632 || || Sbjct 6055 GGAGG 6059 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| |||||||||||||| || |||||||| ||||| || ||||||| ||| Sbjct 6828 GGTATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGC 6887 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||||||| || |||| ||||| || || || ||||| || |||||||| || Sbjct 6888 ACTCTTGCAGACTACAACATCCAGAAGGAGTCTACCCTGCATCTGGTGTTGCGTCTGCGT 6947 Query 27628 GGTGG 27632 || || Sbjct 6948 GGAGG 6952 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || ||||| |||||||||||| | || |||||||| ||||| || ||||||| ||| Sbjct 5474 GGTATCCCTCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGC 5533 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || ||||||||||| |||| ||||| ||||| || ||||| || ||||||| || Sbjct 5534 ACTCTTGCAGACTATAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGTCTGCGT 5593 Query 27628 GGTGG 27632 || || Sbjct 5594 GGAGG 5598 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| |||||||||||||| || |||||||| ||||| || ||||||| || Sbjct 6398 GGTATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 6457 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||||||| || |||| ||||| || || || ||||| || ||||||| || Sbjct 6458 ACTCTTGCAGACTACAACATCCAGAAGGAGTCTACCCTGCATCTGGTACTGCGTCTGCGT 6517 Query 27628 GGTGG 27632 || || Sbjct 6518 GGAGG 6522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||||| || |||||||| ||||| || || |||| || Sbjct 7415 GGTATCCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 7474 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||||||| || |||| ||||| || || || ||||| || ||||||| || Sbjct 7475 ACACTTGCAGACTACAACATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGTCTGCGT 7534 Query 27628 GGTGG 27632 || || Sbjct 7535 GGAGG 7539 >seq7157 Length=7910 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 ||||||| |||||||| || || ||| | ||||| | ||||||||||| || ||||| Sbjct 6164 AGGTGGCCCAGCTGTCTGGTTATGTGTCGGAGCACTCAGCCTATCACCATGGAGAGGCCA 6223 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 || || |||| ||||| |||||| ||| ||||||||||| |||||||||||| Sbjct 6224 GTCTGCAAAGCACTATTGTAGGCCTTGCACAGGACTTTGTCGGTAGCAATAACCTGAACC 6283 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | || | || |||||| || || ||||| | || |||||||||||||| ||| Sbjct 6284 TGCTGTACCCCAGTGGACAATTCGGTACCCGTTTGCAGGGAGGCAAGGATGCTGCCAGCC 6343 Query 32234 CC 32235 || Sbjct 6344 CC 6345 >seq6431 Length=16849 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/232 (71%), Gaps = 17/232 (7%) Strand=Plus/Minus Query 24879 TGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCTGA---ATTTGTTACA 24935 || || |||||||||||||| || ||||| ||||| || ||| ||||||||| Sbjct 2302 TGTAATGGAATTCTGTTCAATCACGAGTCACCACGTCGTGG---TGAGACATTTGTTACC 2246 Query 24936 CGAAAGATTACTCTTGGTATTGACCATTGGATCAAGACA-------AGGGCACCTATTGA 24988 || ||||| || | || | | || | ||||||| ||| |||| | | Sbjct 2245 CGCAAGATCACAAT-GGCAGC-AGCAC-GCATCAAGATGGGCCTGCAGGACACCGTGT-A 2190 Query 24989 GCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGCCAT 25048 || || ||||| |||||||| ||||||||||| ||||| || || || || || || Sbjct 2189 CCTCGGTAACCTTGATGCCAAGCGTGATTGGGGACATGCCAAGGATTATGTGGAGGCAAT 2130 Query 25049 GTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGT 25100 ||||||||| || || ||| | |||||||| ||||||||| | | ||| ||| Sbjct 2129 GTGGCGCATCCTGCAGCAGGACAAGCCAGATGATTTTGTGGTGGCCACTGGT 2078 >seq10818 Length=5054 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| ||||| ||||||||||| || || ||||| ||||| | Sbjct 5023 ATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTAGC 4964 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| ||||| |||||||||||||||||||| Sbjct 4963 GACACTATCGAGAATGTGAAGCAGAAAATTCAGGACAAGGAGGG 4920 >seq7244 Length=2690 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || || ||||| || | || ||||| || ||||| || Sbjct 734 CAGGACAAGGAGGGCATCCCACCGGATCAGCAACGCTTGATATTTGCCGGCAAGCAGCTG 675 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || |||| || ||||| ||||||||||| |||| ||||| || || | ||||| || Sbjct 674 GAAGATGGCCGCACCCTTGCAGACTATAACATCCAGAAGGAGTCTACCTTGCATCTTGTA 615 Query 27616 TTGCGT 27621 ||||| Sbjct 614 CTGCGT 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570194733922000