Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq14182 102 5e-17 seq334 91.5 9e-14 seq7244 82.4 5e-11 >seq14182 Length=2243 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||| ||| || ||| |||||| || ||||| || |||| || || || Sbjct 574 AGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGG 633 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || | |||||| ||||| || || | |||||| Sbjct 634 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCC 693 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || || | ||| ||||| ||||||||| |||| || Sbjct 694 TTGTC-CTGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGT 752 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || ||||| || |||||| Sbjct 753 GATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCATG 792 >seq334 Length=28022 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||||||||| ||| || ||| |||||| || ||||| || |||| || || || Sbjct 27860 AGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGG 27801 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | |||||| ||||| || || | |||||| Sbjct 27800 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCC 27741 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || || | ||| || || ||||||||| |||| || Sbjct 27740 TTGTC-CTGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGT 27682 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || ||||| || ||||| Sbjct 27681 GATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 >seq7244 Length=2690 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || |||||||| |||| ||| || || | ||||| || || || |||||||| Sbjct 633 CTCCTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 692 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT-CTGTGATC 34620 ||| || || || || ||||| || | |||||||||| ||| |||| Sbjct 693 TATCAAGCGTTGCTGATCCGGTGGGATGCCCTCCTTGTCCTGCGATC 739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314667364680425