Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq14742 277 2e-69 >seq14742 Length=52551 Score = 277 bits (306), Expect = 2e-69 Identities = 270/348 (78%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 176617 GTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGT 176676 || |||||||| |||||||||||||| |||||||||||||| ||| | || || || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 176677 GTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTT 176736 || |||||||| || | ||||| ||||||||||| | || ||||| || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 | || || || ||||||||||| ||| | || ||||||||||| ||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 ||||||||||||||||||||||| ||||||||||| ||| | |||||||| || |||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 ||||| ||||| | | ||||||||| | || || | ||||| ||| | || ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTC 176964 || ||||| | ||| ||| || |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 167 bits (184), Expect = 3e-36 Identities = 264/373 (71%), Gaps = 4/373 (1%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| | ||| | || | ||| | ||| | | ||| | |||||||| ||||| || Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT-ATCGTTGCATTTATTGCAGCACC 176231 ||||| || | | || ||| | | ||| || ||| | || || || || ||||| Sbjct 12211 ATGATCCCTACATTATTAACAGCTACTTC-TGTATTCATCATCGCTTTCATCGCTGCACC 12153 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || || |||||||| |||||||| || ||||| | || || || | || |||||||| Sbjct 12152 TCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 12093 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 ||||||||| || || || || || | |||||||| || || |||| ||||||||||| Sbjct 12092 CATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAAT 12033 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| || | | || || ||| | ||||| || || || |||||| | | || Sbjct 12032 TTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 11973 Query 176412 ATTCCACTTCCTTATCGGTATCT-CAGCTTACATGGGACGCCAATGGGAACTTAGTTACA 176470 | ||||||| | | ||||| | | || |||||||| || |||||||| | |||| Sbjct 11972 TTGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTACC 11914 Query 176471 GACTAGGCATGCG 176483 | |||| ||||| Sbjct 11913 GTTTAGGTATGCG 11901 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 176479 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTC 176538 |||||||||||||| ||| || |||||||| ||||| | || || | ||||| ||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 176539 CTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGT 176598 || ||||||| |||| ||||| ||||||||||||||||||||| | || || || || Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 176599 ACATTCAACTTTATG 176613 || |||||||| ||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| ||| ||| | |||||||| ||| | ||||||||||||||||||||||||||| Sbjct 8238 ACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAAT 8179 Query 177070 GCTCACAACTTCCCACTTGAC 177090 || |||||||||||| | ||| Sbjct 8178 GCGCACAACTTCCCATTAGAC 8158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603372003792000