Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq5538 132 2e-26 >seq5538 Length=10074 Score = 132 bits (146), Expect = 2e-26 Identities = 297/437 (68%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 5841 CGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACG-GCCTGCGCCTGCTGG 5899 |||||| || || || || ||||||| || ||| || | | | | | |||| |||| | Sbjct 3731 CGGCCCCGCCGGCACCGGCAAGACCTATCTCGCCGTCGCCTATGCGGCGGCGC-TGCTCG 3789 Query 5900 AGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGC 5959 || ||| ||| || | || || | | || || ||||| ||||| | ||| || Sbjct 3790 AGCGCGGCGAGGTCGCGAAGCTGATCCTGTCGCGCCCGGCCGTCGAGGCCGGCGAGCGGC 3849 Query 5960 TCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGG 6019 ||||||||||||| ||| || ||||||||| | |||||||| |||| | | Sbjct 3850 TCGGCTTCCTGCCGGGCGACATGCGCGAGAAGATCGACCCCTACCTGCGCCCGCTCTACG 3909 Query 6020 ACGCGGTGATCGACCTGGT-CGGCCCGACGATGACGAAGCGCCTCCTCGAGTCGCGCCAG 6078 ||||| | |||| || | | |||||| | | ||| |||| |||| || || | Sbjct 3910 ACGCGCTCTACGACATGATGCCGCCCGAGAAGGTCGA-GCGCGCGCTCGCCTCCGGCGCG 3968 Query 6079 CTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTT---CAACGACACGTACATC 6135 | |||||||||||||| |||| |||||| ||||| ||| | |||| | || |||| Sbjct 3969 ATCGAGGTCGCCCCGCTCGCCTTCATGCGCGGCCGCACGCTGCAGAACGCCGCGATCATC 4028 Query 6136 GTCGCTGACGAGATGCAGAACGCCACC-CCGCGCCAGACCGCGCTGCTGGTGACCCGCCT 6194 || |||||| ||||||| ||||| ||| | |||| | || | |||||||||| Sbjct 4029 CTC---GACGAGGCGCAGAACACCACCGCCGTG-CAGATGAAGATGTTCCTGACCCGCCT 4084 Query 6195 GGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCCGCCCGG 6254 ||| || ||||| || | | ||| |||||| ||||| |||||||||| || Sbjct 4085 CGGCGAGGGCTCGAAGATGTTCGTCACCGGCGACCCGACCCAGGTTGACCTGCCGCAGGG 4144 Query 6255 CAAGGGCAACGGCATCG 6271 | | | | |||| ||| Sbjct 4145 CCAAGTCTCCGGCCTCG 4161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191451105648000