Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq11390 244 3e-60 seq312 212 2e-50 >seq11390 Length=1714 Score = 244 bits (270), Expect = 3e-60 Identities = 261/345 (76%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 40075 GCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTC 40134 ||||||||||| | ||||||||| |||||| ||||| | ||| ||||| ||| | Sbjct 644 GCGCGCCTTGAGCTTGCCGAAGGTGATGATCTGCGCGACGTGATCGCTGCCGTATTTCGC 585 Query 40135 GGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGG 40194 ||||| ||||| ||||||||||| ||| || ||||||||||| | |||||| Sbjct 584 CTGCACGTAGCGGATCACCTCGCCGCGCCGCGTTTCGCAAAAGTCGATGTCGAAGTCGGG 525 Query 40195 CATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATC 40254 ||| || |||||||||||||| ||||| || ||||| | || ||| ||| || ||||| Sbjct 524 CATCGAGACGCGCTCGGGGTTGAGGAAGCGTTCGAACAGCAGGCCGAGCTTCAAGGGATC 465 Query 40255 GAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGG 40314 ||| |||||||| ||| |||| ||| |||||| || ||||||| ||||| || Sbjct 464 GAGATCGGTGATGGTGAGCGCCCAGGCCACCGCCGAACCCGCGCCCGAGCCGCGCCCCGG 405 Query 40315 ACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTA 40374 || ||| | ||| | ||||||||||| ||||||||||||||||| ||||||||| Sbjct 404 CCCCACCGGGATGCCCTGTTCCTTGGCCCACTTGATGAAGTCGGCGACGATCAGGAAGTA 345 Query 40375 GGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAG 40419 | || |||||||||| | ||||| |||||||||||| | ||| Sbjct 344 GCCGGGAAAGCCCATCTTCACGATCACGTCGATCTCGTATTCGAG 300 Score = 114 bits (126), Expect = 4e-21 Identities = 230/338 (68%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 39019 CACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGAT 39078 |||||| |||||| ||||| |||||| || || ||| || | || || ||||| || Sbjct 1655 CACGGCGGCCATGAACTCGACCGGGTGGTTCGCCTTGAGCCATGCGGTCTGGTAGCTGAC 1596 Query 39079 GAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCAC 39138 | | | || || || | ||| | |||||||||| |||| |||||| | |||| Sbjct 1595 CACCGCATAGGCTGCGGCGTGGGACTTGTTGAAGCCGTAGTTGGCGAATTTCTCCAGCAG 1536 Query 39139 GTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTC-GCGCGCT----CCCTTC 39193 ||| | ||| | | ||| | | | || || ||| | |||| | |||| Sbjct 1535 GTCGAAGACCTC---GCCGGCCTTCTTCTCGT--CCACGCCCTGCGCCTTGCAGCCCTCG 1481 Query 39194 TGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGC 39253 ||| || | ||||| |||| |||||| |||||||||||||||| || ||| Sbjct 1480 ACGAACTTGGGGCGTTCCTTCGCCATCTCCTCGGCGATCTTCTTGCCCATGGCGCGGCGC 1421 Query 39254 AGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGC 39313 || |||||||| ||| |||||||| || || | || |||||| || | |||||| Sbjct 1420 AGAAGGTCGGCTCCGCCAAGGCTGTATCCCGCCATGACCTGCGCGATCTGCATCACCTGT 1361 Query 39314 TCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGAT 39351 |||||||||| ||||| ||||| ||| | | ||||| Sbjct 1360 TCCTGGTAGACGATGATGCCGTAGGTCTCGGCGAGGAT 1323 >seq312 Length=5289 Score = 212 bits (234), Expect = 2e-50 Identities = 283/391 (72%), Gaps = 7/391 (2%) Strand=Plus/Minus Query 40026 CGACCTGGA---AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCT 40082 |||||||| ||||| | | |||||||||| | |||| || | || ||| |||| Sbjct 1141 CGACCTGGCCATAGGGCATCTGCAGCACGCGGCCGACGTCGCGCAGCACGGCGCGGGCCT 1082 Query 40083 TGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGT 40142 | | ||||||||| |||||| || |||| ||| |||||||| | ||||| Sbjct 1081 GCAGCGTGCCGAAGGTGATGATCTGCGCCACCTGCTCGCGGCCGTACTTGCCCTGGACGT 1022 Query 40143 ACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGA 40200 | ||||| |||||| |||| || || | || |||||||||||| | ||||||||| || Sbjct 1021 AGCGGATCACCTCGTCGCGCCGGTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGA 964 Query 40201 CACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTC 40260 ||||||||||||||| ||||| |||||||| | ||| || || || |||||||| Sbjct 963 CACGCGCTCGGGGTTGAGGAAGCGCTCGAACAGTAGCGCGAAGCGCATCGGGTCGAGGTC 904 Query 40261 GGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGAC 40320 ||| | | || | |||||||| ||||| || || ||||||| || || || ||||| Sbjct 903 GGTCACCGTCAGCGAATAGGCGACGAGCGAGCCCGCGCCCGAGCCGCGGCCCGGCCCGAC 844 Query 40321 CCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGG 40380 | || | | |||| ||||| ||||||||||||||||| ||||||||| || Sbjct 843 GGGAATCCCTTGCGCCTTCGCCCACTTGATGAAGTCGGCGACGATGAGGAAGTAGCCGGG 784 Query 40381 GAAGCCCATCTGGATGATCATGTCGATCTCG 40411 ||| |||| || |||| | ||||| |||| Sbjct 783 GAACTTCATCCGGGTGATGACGTCGAGCTCG 753 Score = 149 bits (164), Expect = 2e-31 Identities = 396/594 (67%), Gaps = 36/594 (6%) Strand=Plus/Minus Query 39022 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39081 ||| || | | ||||| |||| |||| || ||| ||||| ||||| ||||||||| ||| Sbjct 2097 GGCGGCGAGGAACTCGACCGGATAGTTCGCCTTGAGGTAGGCCGTCTGGTAGGCGACGAG 2038 Query 39082 CCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 39141 |||| || || | ||||| ||||||||| |||| ||||||| |||||| || Sbjct 2037 GGCGTAGGCTGCGGCGTGCGACTTGTTGAAACCGTAGTCGGCGAATTTCGCGAGCAGATC 1978 Query 39142 CCACACCGCCT-GGATGGCGCTGTCCGAGTAGCCTCGCTCGCGCG-CTCCCTTCTGGAAG 39199 | | ||| | || | ||| | || |||| || | || | |||| |||| Sbjct 1977 GAAGATCGCGTCGGCCGCCGCGG--CGTCCAGCCCCGAGGCCCCGGCGCCCTCGACGAAG 1920 Query 39200 TTCACGAACTCCTTGGCCAGAACCTCGGGCTT---CTTCTTGCCCATGGCCCGACGCAGC 39256 |||| || | ||| ||| | ||| ||||||||||||||| || |||||| Sbjct 1919 CGCACGCGCTGGGCGTCCAT---CTCCGACTTGATCTTCTTGCCCATGGCGCGGCGCAGC 1863 Query 39257 AGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCC 39316 |||||||||| ||| || |||||| | ||||||||||| || | |||||||||| Sbjct 1862 AGGTCGGCCTCGCCGAGCGAGTAGCCCGACAGGATCTGCGCGATCTGCATCACCTGCTCC 1803 Query 39317 TGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCCTCCACCTCG 39376 ||||||| ||||| ||||| ||| || || | ||| ||||| || | Sbjct 1802 TGGTAGACGATGATGCCGTAGGTC---TC------CTTCAGCACCGGCTCGAGCAGC--- 1755 Query 39377 GGGTGAA--TCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTCGTG-TGT 39433 || || | | | || | | | | || || | ||| || | | ||| || | ||| Sbjct 1754 GGATGGATGTAGTCGGG--CACTTCGTGGCCGTGCTTTCGCGCGCCGTAGACCGGGATGT 1697 Query 39434 GAGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAAG 39493 | ||||||| || || ||||| |||||||||| || ||||||||||||| Sbjct 1696 TCG-------CCATCGGGCCGGGGCGGTAGAGCGCGACGAGCGCGATGATGTCCTCGAAG 1644 Query 39494 TTGTCGGGCTTCA-GCAGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGGAACAC 39552 ||||||||| | | ||| || | |||||| | || |||||||||||||| Sbjct 1643 CGGTCGGGCTTGATGTCGGC-GATCGCCTTGCGCATGCCCATGCTTTCGAGCTGGAACAC 1585 Query 39553 CGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGG 39606 || || || ||||| ||| |||| |||||| | | |||||| | ||| Sbjct 1584 GCCGACGGTCTCGCCCTTCTGCAGGAGCTTGTAGGTGGCAGGGTCGTCGAACGG 1531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160375494198150