Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq6492 150 1e-31 >seq6492 Length=3580 Score = 150 bits (166), Expect = 1e-31 Identities = 206/280 (74%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 96871 CTCGGCGTGGCGCACGCCG-GCTTCCTGCATCTGCCGGTACCGGTCATCCATCTCCACGG 96929 |||| || |||||||||| ||||| ||||| | ||| ||||| ||||||||| ||| Sbjct 2770 CTCGATGTTGCGCACGCCGAGCTTCGA-CATCTTCTTGTAGCGGTCCTCCATCTCC-CGG 2827 Query 96930 TGAG-CCACCGCAGCGTCTTAACCGCCT-CGTCGGGCTCGGTGACCACCGGCTGCAAAAG 96987 | |||| ||||| | ||||||| | ||||| ||||||||||||||| || ||| Sbjct 2828 ACCGTCCACTTCAGCGCCACCACCGCCTTCTTCGGG-TCGGTGACCACCGGCGTCAGAAG 2886 Query 96988 GTGGGGGATACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGTTT 97047 ||| ||||| |||| ||| | ||| |||| ||||||||||||||||||||| || Sbjct 2887 GTGCGGGATGCCGTCGTAGACCGAGAGCTCCAGCATCTTCGGGTCGATCATGATCAGCCG 2946 Query 97048 GACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGA 97107 | | | || || | |||||||||| || | | ||||| |||||| | || Sbjct 2947 GCACTGCTCCGGCGTCAGCCGGTAGAGCAGCGACAGGATCATCGTGTTGATCGACACCGA 3006 Query 97108 CTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGTGCGGC 97147 ||| || || ||||||| ||| || ||||||| ||||||| Sbjct 3007 CTTGCCCGAGCCGGTGGTGCCGGCGACCAGCATGTGCGGC 3046 Score = 86.0 bits (94), Expect = 4e-12 Identities = 174/254 (69%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 96602 AGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGA--TGCTGTGG 96659 ||||||||||| || |||| | ||||| ||||| ||| || | || || || Sbjct 2387 AGCTGCTCGGCGCCCTGCTCGCCGAGGATGGTGCGGCTGTCGATGCGCGAGGTGACCTG- 2445 Query 96660 CGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGG 96719 ||| |||| | | ||| | ||| | ||||| ||| |||| || || || |||| Sbjct 2446 -GAAGGAGACGCGCGTCGGGAAGTTCGCCTTGATCGTGCCGGTGATGACGTCGACCGAGG 2504 Query 96720 GCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGA 96779 | ||||||||||||| || || || || ||||| ||||||||| |||| |||| || Sbjct 2505 GACGCTGCGTCGCCATGATGACGTGGATGCCGGCGGCGCGCGCCATCTGCGCGAGCCGCT 2564 Query 96780 CAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGA 96839 | || |||||| || | |||| | | ||||||| ||||| || | ||||||| Sbjct 2565 GCACCGTGCCCTCGA--TC-TCCTTGCCGGCCACCATCATCAGGTCGGCCATCTCGTCGA 2621 Query 96840 CCACTACCACGATG 96853 | || |||||| Sbjct 2622 TGATGACGACGATG 2635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351165745983225