Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq312 192 2e-44 seq11390 188 2e-43 >seq312 Length=5289 Score = 192 bits (212), Expect = 2e-44 Identities = 279/392 (71%), Gaps = 9/392 (2%) Strand=Plus/Minus Query 38933 CGACCTGGA---AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCT 38989 |||||||| ||||| | | |||||||||| | |||| || | || ||| |||| Sbjct 1141 CGACCTGGCCATAGGGCATCTGCAGCACGCGGCCGACGTCGCGCAGCACGGCGCGGGCCT 1082 Query 38990 TGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGT 39049 | | ||| | || |||||| || |||| || | ||||||||| | ||||| Sbjct 1081 GCAGCGTGCCGAAGGTGATGATCTGCGCCACCTGCTCGCGGCCGTACTTGCCCTGGACGT 1022 Query 39050 ACCGGATCACGTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGTCGGGCATGG 39106 | |||||||| ||| | ||| ||||| | | ||||||||||| | ||||||||| | Sbjct 1021 AGCGGATCACCTCGTC---GCGCCGGTCCTGGCAGAAGTCGATGTCGAAGTCGGGCATCG 965 Query 39107 AGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGT 39166 | || ||||| ||||| ||||| |||||||| | ||| || | || ||||| |||| Sbjct 964 ACACGCGCTCGGGGTTGAGGAAGCGCTCGAACAGTAGCGCGAAGCGCATCGGGTCGAGGT 905 Query 39167 CGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGA 39226 |||| | | || | || ||| | |||||||| || | |||||||| || || |||| Sbjct 904 CGGTCACCGTCAGCGAATAGGCGACGAGCGAGCCCGCGCCCGAGCCGCGGCCCGGCCCGA 845 Query 39227 CCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACG 39286 | | || | | |||||||||| ||||||||||||||||| ||||||||| | Sbjct 844 CGGGAATCCCTTGCGCCTTCGCCCACTTGATGAAGTCGGCGACGATGAGGAAGTAGCCGG 785 Query 39287 GGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 ||||| |||| || |||| | ||||| |||| Sbjct 784 GGAACTTCATCCGGGTGATGACGTCGAGCTCG 753 Score = 174 bits (192), Expect = 5e-39 Identities = 401/596 (67%), Gaps = 40/596 (7%) Strand=Plus/Minus Query 37929 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 37988 ||| || | | ||||| |||| |||| || ||| ||||| ||||| ||||||||| ||| Sbjct 2097 GGCGGCGAGGAACTCGACCGGATAGTTCGCCTTGAGGTAGGCCGTCTGGTAGGCGACGAG 2038 Query 37989 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38048 |||| || || | ||||| ||||||||| |||| ||||||| |||||| || Sbjct 2037 GGCGTAGGCTGCGGCGTGCGACTTGTTGAAACCGTAGTCGGCGAATTTCGCGAGCAGATC 1978 Query 38049 CCACACCGCCCGGATGGCAGCCTCCGAGT--AGCCTCGCTCGCTCGCCCCCTTCTG-GAA 38105 | | ||| | ||| ||| | | || |||| || | || | || || ||| Sbjct 1977 GAAGATCGC---GTCGGCCGCCGCGGCGTCCAGCCCCGAGGCCCCGGCGCCCTCGACGAA 1921 Query 38106 GTTCACGAACTCCTTGGCCAGCACCTCGGGCTT---CTTCTTGCCCATGGCGCGACGGAG 38162 | |||| || ||| || ||| | ||| |||||||||||||||||| || || Sbjct 1920 GCGCACGCGCTG---GGCGTCCATCTCCGACTTGATCTTCTTGCCCATGGCGCGGCGCAG 1864 Query 38163 GAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTC 38222 |||||||||| ||||| | ||| || | |||||||||||| || | ||||||||| Sbjct 1863 CAGGTCGGCCTCGCCGAGCGAGTAGCCCGACAGGATCTGCGCGATCTGCATCACCTGCTC 1804 Query 38223 CTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTC 38282 |||||||| ||||| ||| ||||| | ||| || |||||| || | Sbjct 1803 CTGGTAGACGATGATGCCGTAGGTCTCCTTCAG---------CACCGGCTCGAGCAGC-- 1755 Query 38283 GGGGTGGATCGGCGT-GATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCG---TGT 38338 || ||||| | || | | | | || |||| ||| || | ||||| || ||| Sbjct 1754 -GGATGGAT-GTAGTCGGGCACTTCGTGGCCGTGCTTTCGCGCGCCGTAGACCGGGATGT 1697 Query 38339 GCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGA 38398 || ||||||| || || ||||| |||||||||| || ||||||||||| Sbjct 1696 TCG---------CCATCGGGCCGGGGCGGTAGAGCGCGACGAGCGCGATGATGTCCTCGA 1646 Query 38399 ACTGGTCCGGCTTCA-GCAGGCGAAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAAG 38457 | |||| ||||| | | |||| | | |||||| | || ||||||||||| Sbjct 1645 AGCGGTCGGGCTTGATGTCGGCG-ATCGCCTTGCGCATGCCCATGCTTTCGAGCTGGAAC 1587 Query 38458 ACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGG 38513 || || ||| |||||| | ||| |||| |||||| || |||||||| | ||| Sbjct 1586 ACGCCGACGGTCTCGCCCTTCTGCAGGAGCTTGTAGGTGGCAGGGTCGTCGAACGG 1531 >seq11390 Length=1714 Score = 188 bits (208), Expect = 2e-43 Identities = 254/348 (73%), Gaps = 8/348 (2%) Strand=Plus/Minus Query 38982 GCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTC 39041 ||||||||||| | ||| | || |||||| ||||| | || |||||||| ||| | Sbjct 644 GCGCGCCTTGAGCTTGCCGAAGGTGATGATCTGCGCGACGTGATCGCTGCCGTATTTCGC 585 Query 39042 GGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGTC 39098 ||||| |||||||| ||||| || || || | ||| ||||||||||| | ||| Sbjct 584 CTGCACGTAGCGGATCACCTCGCCGCGCCG-CGTT--TCGCAAAAGTCGATGTCGAAGTC 528 Query 39099 GGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGG 39158 |||||| ||||| ||||| ||||| ||||| || ||||| | || ||| | | ||| Sbjct 527 GGGCATCGAGACGCGCTCGGGGTTGAGGAAGCGTTCGAACAGCAGGCCGAGCTTCAAGGG 468 Query 39159 GTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCC 39218 || || |||||||| ||| || | || || ||| || || | ||||||||||| Sbjct 467 ATCGAGATCGGTGATGGTGAGCGCCCAGGCCACCGCCGAACCCGCGCCCGAGCCGCGCCC 408 Query 39219 AGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAA 39278 || || ||| | ||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct 407 CGGCCCCACCGGGATGCCCTGTTCCTTGGCCCACTTGATGAAGTCGGCGACGATCAGGAA 348 Query 39279 GTACGACGGGAAC-CCCATCTGGTTGATCATGTCGATCTCGTACTCGA 39325 ||| | |||||| ||||||| ||||| |||||||||||| |||| Sbjct 347 GTA-GCCGGGAAAGCCCATCTTCACGATCACGTCGATCTCGTATTCGA 301 Score = 125 bits (138), Expect = 2e-24 Identities = 458/706 (65%), Gaps = 41/706 (6%) Strand=Plus/Minus Query 37926 CACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGAT 37985 |||||| |||||| ||||| |||||| || || ||| || | || || ||||| || Sbjct 1655 CACGGCGGCCATGAACTCGACCGGGTGGTTCGCCTTGAGCCATGCGGTCTGGTAGCTGAC 1596 Query 37986 GAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCAC 38045 | | || || || | ||| | |||||||||| |||| |||||| | |||| Sbjct 1595 CACCGCATAGGCTGCGGCGTGGGACTTGTTGAAGCCGTAGTTGGCGAATTTCTCCAGCAG 1536 Query 38046 GTCCCACACCGCCCGGATGGCAGCCTCCGAGTAGCCTCGCT-CGC-TCGCCCCCTTCTG- 38102 ||| | ||| | | | || || | || | | || ||| | || || || Sbjct 1535 GTCGAAGACCTCGCCG---GCCTTCTTCTCGTCCACGCCCTGCGCCTTGCAGCCCTCGAC 1479 Query 38103 GAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAG 38162 ||| || | ||||| |||| | |||||| ||||||||||||||||||| || || Sbjct 1478 GAACTTGGGGCGTTCCTTCGCCATCTCCTCGGCGATCTTCTTGCCCATGGCGCGGCGCAG 1419 Query 38163 GAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTC 38222 |||||||| || ||| |||| || |||| || |||||| || | |||||| || Sbjct 1418 AAGGTCGGCTCCGCCAAGGCTGTATCCCGCCATGACCTGCGCGATCTGCATCACCTGTTC 1359 Query 38223 CTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTC 38282 |||||||| ||||| ||| ||||| | | ||||| | | ||| ||| | | | Sbjct 1358 CTGGTAGACGATGATGCCGTAGGTCTCGGCGAGGATGCCCTCGAGCTTCTCGTGCGGAT- 1300 Query 38283 GGGGTGGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCG---TGTG 38339 | ||||||| | ||| | ||| |||||| || || | || ||| Sbjct 1299 --ATTCGATCGGC---ACCTC-----GCCCG-CCTTGCGCTGGCCGAACAGCGGAATGT- 1252 Query 38340 CGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA 38399 || ||||||| ||||| ||||| |||| ||||| || |||||| |||| Sbjct 1251 --------TGTCCATCGGCCCCGGGCGGTAGAGCGAGACGAGCGCGATGATGTCGCCGAA 1200 Query 38400 CTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAAGAC 38459 | | |||||||| | ||| | ||||||| | || ||||||||||| || Sbjct 1199 ATTGGTCGGCTTCACCGCCTTGAGCGTGCGGCGCATCCCTTCGGATTCGAGCTGGAACAC 1140 Query 38460 CGAGAGGGTGTCGCC--CCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATG 38517 | |||| ||| |||| || |||||||||| |||||| ||||| ||| |||| Sbjct 1139 GCCCACCGTGTTGCCCGCCTG--CATCAGCTCGTAGACTGCCGGATCGTCGAGCCCGATG 1082 Query 38518 TTCTCGATGTCGACGTGCTCACCACG-GTTGCG-GCGGATGTTCTCGACCGCGTCGCCCA 38575 |||| |||| | || || | ||| || || |||||||| | || || Sbjct 1081 GCGTCGAGATCGATGGCGATGCCGCGCGCCGCGAGCAGA-----TCGACCGCCTTGCGCA 1027 Query 38576 TGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCC 38621 | || ||| || |||||||||||||| | ||||| ||| || Sbjct 1026 GCACCGAGAGCGTCTTCAGCCCGAGGAAGTCGAACTTCACCAGCCC 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159684427372950