Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq312 215 2e-51 seq11390 194 5e-45 >seq312 Length=5289 Score = 215 bits (238), Expect = 2e-51 Identities = 295/409 (72%), Gaps = 11/409 (3%) Strand=Plus/Minus Query 39366 CGACCTG---AAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCT 39422 ||||||| | ||||| | | |||||||||| | |||| || | || |||||||| Sbjct 1141 CGACCTGGCCATAGGGCATCTGCAGCACGCGGCCGACGTCGCGCAGCACGGCGCGGGCCT 1082 Query 39423 TGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGT 39482 | | ||||| | || |||||| || |||| |||| ||||||||| | ||||| Sbjct 1081 GCAGCGTGCCGAAGGTGATGATCTGCGCCACCTGCTCGCGGCCGTACTTGCCCTGGACGT 1022 Query 39483 ACCGGATCACGTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGTCGGGCATGG 39539 | |||||||| ||| | ||| ||||| | | ||||||||||| | ||||||||| | Sbjct 1021 AGCGGATCACCTCGTC---GCGCCGGTCCTGGCAGAAGTCGATGTCGAAGTCGGGCATCG 965 Query 39540 AGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGT 39599 | |||||||| ||||| ||||| |||||||| | ||| || | || ||||| |||| Sbjct 964 ACACGCGCTCGGGGTTGAGGAAGCGCTCGAACAGTAGCGCGAAGCGCATCGGGTCGAGGT 905 Query 39600 CGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGA 39659 |||| | | || | || ||| | |||||||| || | ||||| || || || |||| Sbjct 904 CGGTCACCGTCAGCGAATAGGCGACGAGCGAGCCCGCGCCCGAGCCGCGGCCCGGCCCGA 845 Query 39660 CCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACG 39719 | | || | | |||||||||| ||||||||||||||||| ||||||||| | Sbjct 844 CGGGAATCCCTTGCGCCTTCGCCCACTTGATGAAGTCGGCGACGATGAGGAAGTAGCCGG 785 Query 39720 GGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCTGCGTTCG 39768 ||||| |||| || |||| | ||||| |||| || ||| ||||||| Sbjct 784 GGAACTTCATCCGGGTGATGACGTCGAGCTCGAAGGCGA--GGCGTTCG 738 Score = 163 bits (180), Expect = 9e-36 Identities = 400/597 (67%), Gaps = 42/597 (7%) Strand=Plus/Minus Query 38362 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 38421 ||| || | | ||||| |||| |||| || ||| ||||| ||||| ||||||||| ||| Sbjct 2097 GGCGGCGAGGAACTCGACCGGATAGTTCGCCTTGAGGTAGGCCGTCTGGTAGGCGACGAG 2038 Query 38422 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38481 |||| || || | ||||| ||||||||| |||| ||||||| |||||| || Sbjct 2037 GGCGTAGGCTGCGGCGTGCGACTTGTTGAAACCGTAGTCGGCGAATTTCGCGAGCAGATC 1978 Query 38482 CCACACCGCC-CGGATG--GCAGCGTCCGAGTAGCCTCGCT-CGCTTGCTCCCTTCTGGA 38537 | | ||| ||| | || |||||| |||| || | | || |||| || Sbjct 1977 GAAGATCGCGTCGGCCGCCGCGGCGTCC----AGCCCCGAGGCCCCGGCGCCCTCGACGA 1922 Query 38538 AGTTCACGAACTCCTTGGCCAGCACCTCGGGCTT---CTTCTTGCCCATGGCGCGACGGA 38594 || |||| || ||| || ||| | ||| |||||||||||||||||| || | Sbjct 1921 AGCGCACGCGCTG---GGCGTCCATCTCCGACTTGATCTTCTTGCCCATGGCGCGGCGCA 1865 Query 38595 GAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCT 38654 | |||||||||| ||||| | ||| || | |||||||||||| || | |||||||| Sbjct 1864 GCAGGTCGGCCTCGCCGAGCGAGTAGCCCGACAGGATCTGCGCGATCTGCATCACCTGCT 1805 Query 38655 CCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCT 38714 ||||||||| ||||| ||| ||||| | ||| || |||||| || | Sbjct 1804 CCTGGTAGACGATGATGCCGTAGGTCTCCTTCAG---------CACCGGCTCGAGCAGC- 1755 Query 38715 CGGGGTGGATCGGCGT-GATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCG---TG 38770 || ||||| | || | | | | || |||| ||| || | ||||| || || Sbjct 1754 --GGATGGAT-GTAGTCGGGCACTTCGTGGCCGTGCTTTCGCGCGCCGTAGACCGGGATG 1698 Query 38771 TGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCG 38830 | || ||||||| || || ||||| ||||| |||| ||| |||||||||| Sbjct 1697 TTCG---------CCATCGGGCCGGGGCGGTAGAGCGCGACGAGCGCGATGATGTCCTCG 1647 Query 38831 AACTGGTCCGGCTTCA-GCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAA 38889 || |||| ||||| | | ||| || | |||||| | || ||||||||||| Sbjct 1646 AAGCGGTCGGGCTTGATGTCGGC-GATCGCCTTGCGCATGCCCATGCTTTCGAGCTGGAA 1588 Query 38890 CACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGG 38946 ||| || || |||||| | ||| |||| ||| || || ||||| || | ||| Sbjct 1587 CACGCCGACGGTCTCGCCCTTCTGCAGGAGCTTGTAGGTGGCAGGGTCGTCGAACGG 1531 >seq11390 Length=1714 Score = 194 bits (214), Expect = 5e-45 Identities = 255/348 (73%), Gaps = 8/348 (2%) Strand=Plus/Minus Query 39415 GCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTC 39474 ||| ||||||| | ||||| | || |||||| ||||| | ||||||||||| ||| | Sbjct 644 GCGCGCCTTGAGCTTGCCGAAGGTGATGATCTGCGCGACGTGATCGCTGCCGTATTTCGC 585 Query 39475 GGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGTC 39531 ||||| |||||||| ||||| || || || | ||| ||||||||||| | ||| Sbjct 584 CTGCACGTAGCGGATCACCTCGCCGCGCCG-CGTT--TCGCAAAAGTCGATGTCGAAGTC 528 Query 39532 GGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGG 39591 |||||| ||||||||||| ||||| ||||| || ||||| | || ||| | | ||| Sbjct 527 GGGCATCGAGACGCGCTCGGGGTTGAGGAAGCGTTCGAACAGCAGGCCGAGCTTCAAGGG 468 Query 39592 GTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCC 39651 || || |||||||| ||| || | || || ||| || || | ||||| ||||| Sbjct 467 ATCGAGATCGGTGATGGTGAGCGCCCAGGCCACCGCCGAACCCGCGCCCGAGCCGCGCCC 408 Query 39652 AGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAA 39711 || || ||| | || | ||||| ||||| ||||||||||||||||| ||||| Sbjct 407 CGGCCCCACCGGGATGCCCTGTTCCTTGGCCCACTTGATGAAGTCGGCGACGATCAGGAA 348 Query 39712 GTACGACGGGAAC-CCCATCTGGTTGATCATGTCGATCTCGTAGTCGA 39758 ||| | |||||| ||||||| ||||| |||||||||||| |||| Sbjct 347 GTA-GCCGGGAAAGCCCATCTTCACGATCACGTCGATCTCGTATTCGA 301 Score = 134 bits (148), Expect = 4e-27 Identities = 461/706 (65%), Gaps = 41/706 (6%) Strand=Plus/Minus Query 38359 CACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGAT 38418 |||||| |||||| ||||| |||||| || || ||| || | || || ||||| || Sbjct 1655 CACGGCGGCCATGAACTCGACCGGGTGGTTCGCCTTGAGCCATGCGGTCTGGTAGCTGAC 1596 Query 38419 GAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCAC 38478 | | || || || | ||| | |||||||||| |||| |||||| | |||| Sbjct 1595 CACCGCATAGGCTGCGGCGTGGGACTTGTTGAAGCCGTAGTTGGCGAATTTCTCCAGCAG 1536 Query 38479 GTCCCACACCGCCCGGATGGCAGCGTC-CGAGTA-GCCTCGCTCGCTTGCTCCCTTCTG- 38535 ||| | ||| | | | | | | || || | ||| || | ||||| || || Sbjct 1535 GTCGAAGACCTCGCCG--GCCTTCTTCTCGTCCACGCCCTGCGC-CTTGCAGCCCTCGAC 1479 Query 38536 GAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAG 38595 ||| || | ||||| |||| | |||||| ||||||||||||||||||| || || Sbjct 1478 GAACTTGGGGCGTTCCTTCGCCATCTCCTCGGCGATCTTCTTGCCCATGGCGCGGCGCAG 1419 Query 38596 AAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTC 38655 ||||||||| || ||| |||| || |||| || |||||| || | |||||| || Sbjct 1418 AAGGTCGGCTCCGCCAAGGCTGTATCCCGCCATGACCTGCGCGATCTGCATCACCTGTTC 1359 Query 38656 CTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTC 38715 |||||||| ||||| ||| ||||| | | ||||| | | ||| ||| | | | Sbjct 1358 CTGGTAGACGATGATGCCGTAGGTCTCGGCGAGGATGCCCTCGAGCTTCTCGTGCGGAT- 1300 Query 38716 GGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCG---TGTG 38772 | ||||||| | ||| ||||| |||||| || || | || ||| Sbjct 1299 --ATTCGATCGGC---ACCTC-----GCCCG-CCTTGCGCTGGCCGAACAGCGGAATGT- 1252 Query 38773 CGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAA 38832 || ||||||| ||||| ||||| |||| |||| ||| |||||| |||| Sbjct 1251 --------TGTCCATCGGCCCCGGGCGGTAGAGCGAGACGAGCGCGATGATGTCGCCGAA 1200 Query 38833 CTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAACAC 38892 | | |||||||| | |||| | ||||||| | || |||||||||||||| Sbjct 1199 ATTGGTCGGCTTCACCGCCTTGAGCGTGCGGCGCATCCCTTCGGATTCGAGCTGGAACAC 1140 Query 38893 CGAGAGCGTGTCGCC--CCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGCGGGATG 38950 | ||||| ||| |||| || ||||||||| || || || || ||| |||| Sbjct 1139 GCCCACCGTGTTGCCCGCCTG--CATCAGCTCGTAGACTGCCGGATCGTCGAGCCCGATG 1082 Query 38951 TTCTCGATGTCGACGTGCTCACCACG-GTTGCG-GCGGATGTTCTCGACCGCGTCGCCCA 39008 |||| |||| | || || | ||| || || |||||||| | || || Sbjct 1081 GCGTCGAGATCGATGGCGATGCCGCGCGCCGCGAGCAGA-----TCGACCGCCTTGCGCA 1027 Query 39009 TGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCC 39054 | || ||| || |||||||||||||| | ||||| ||| || Sbjct 1026 GCACCGAGAGCGTCTTCAGCCCGAGGAAGTCGAACTTCACCAGCCC 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160209126258750