Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq13461 250 8e-62 seq8736 141 3e-29 seq16013 113 1e-20 seq11482 111 5e-20 seq1895 82.4 2e-11 >seq13461 Length=725 Score = 250 bits (276), Expect = 8e-62 Identities = 482/699 (69%), Gaps = 58/699 (8%) Strand=Plus/Plus Query 25829 GAGGTCGCCAACCGCTCACAGGGCGGCAAGGACGTCCTCGCAGCGATCGAGAAGGGCGAA 25888 ||| ||||||| || || ||| |||| || ||||||| || |||||||||||||| Sbjct 3 GAGATCGCCAAGCGGTCGGAGGCCGGCCAGCGCGTCCTCAATGCCATCGAGAAGGGCGAG 62 Query 25889 CCGGTCCACACCTCGACCGGTCTCCTCGCCAACCTTGAGGCGGTCACCAATGCC---GCC 25945 || ||||||||||||||||| || ||| || | | ||||||| |||||| | | | Sbjct 63 CCCGTCCACACCTCGACCGGCCTGCTCTGCATCATGGAGGCGG---CCAATGGCGAGGTC 119 Query 25946 GACCACAAGCATATCGCTCGCAACATCGAGTTCGACCACGACGCCATCCTCCTCGGTGAG 26005 | ||||||| |||| ||| | |||| ||||||||||||||||||||||||| ||| Sbjct 120 GCCCACAAGTTCGTCGCCCGCGAGATCGTCTTCGACCACGACGCCATCCTCCTCGACGAG 179 Query 26006 GTTGGTGCGGCCACCCCTGACCAGGGCGTCGGCATGCTGGTCAACGCGAACGGCGAGCAA 26065 | || ||||| || || || ||||||||||||||| ||||||||| ||||| || | Sbjct 180 GACGGCGCGGCTACGCCCGAGCAGGGCGTCGGCATGATGGTCAACG----CGGCGGGCCA 235 Query 26066 GAAGAAATCGAGGTCATCAACTCCGCCGTTCAA---GAGGCCGAGCGTGACATCGATTGG 26122 | ||||||||||||||||| |||| | | || || || || ||||| ||| |||| Sbjct 236 G--GAAATCGAGGTCATCAATTCCGTCTTCGAAGATGAAGCGGACCGTGAGCTCGGTTGG 293 Query 26123 GCGATGGATTCCCTCGCC---CGAGCCCTGGAGAAGCGCCAGCGGGCGGGGATCCTGGAC 26179 ||| | || || ||| ||||| | |||||||||| |||| || ||| Sbjct 294 GCGGTCGA---CCAGGCCGTTCGAGCGATCGAGAAGCGCCGCAGGGCCTCCTTCTACGAC 350 Query 26180 AAACTGAAAGCCGCGATCCTGGAAGGCCTT----GGCATTTCCGAGCGGGAACC----CA 26231 | ||| ||| || | | ||||| | |||| ||||||||||||| || Sbjct 351 CGCATCAAAACCGTCCTCATCG-AGGCCATCACCGGCA---CCGAGCGGGAACCCTCTCA 406 Query 26232 CCACGAACACGAAGGACACTGAGATGCCTGTCACTGACGAGCAGTTCACTGCGCTTTCCG 26291 || || || ||||| |||| ||| ||||| | | ||||||||| |||||| ||| Sbjct 407 ACAGCAAAAC-AAGGATGCTGAAATGACTGTCTCCCAGGAGCAGTTCGATGCGCTGTCCA 465 Query 26292 CGAAGGTCGATGCCCTCTCGGA-AGGCTTCAAC---AAG--ATCGGGGAGACC---GTCA 26342 |||||| || |||||||||| ||| | | ||| ||||||| || | || Sbjct 466 AGAAGGTGGAAACCCTCTCGGACTCGCTGAAGCCCGAAGCCATCGGGGCCGCCATGGCCA 525 Query 26343 C---------CAACGCCGTTGCGGCCGCCGTGAAGCCGATCACCGACGCAC---AGGCCG 26390 | ||||| || || || |||||||| | |||||| | ||||| Sbjct 526 CGGTGATCGGGAACGCGGTGCAGGAGGCTGTGAAGCCCCTGACCGACAACCTCGAGGCCC 585 Query 26391 AAATGGTCGCCAACCAGAAGGCCAAGGACGACGCTGAACACGCCGACCTGGTCACCAAGA 26450 | ||| ||||||||||||||||| |||| |||| || ||| | | Sbjct 586 TGCAGAACGC---GCAGAAGGCCAAGGACGAGCAGGAACTGGCCGGTCTCGTCGAGACCA 642 Query 26451 TCGTCAAGGCCAACGTCCTCGACGAGGAAACGGCCAAGG 26489 |||||||||| ||| | ||||||| || || ||||||| Sbjct 643 TCGTCAAGGCGAACCTGCTCGACGCCGAGACCGCCAAGG 681 >seq8736 Length=727 Score = 141 bits (156), Expect = 3e-29 Identities = 243/350 (69%), Gaps = 11/350 (3%) Strand=Plus/Plus Query 24089 CCATGTTCCTGACCAAGAGGCACCG---ATGAGCAACGTAG-TCAGCCTGGTCAACCACG 24144 |||| |||||||||||||||||||| |||||| | | || | ||| |||| | Sbjct 372 CCATTTTCCTGACCAAGAGGCACCGCCGATGAGCCGGATCGCTCTGA-TGGCCAACGCGG 430 Query 24145 TCCAAAGGCGCCTTGGCAGCATGTTCCCCGGCTTCTTCGCCAACGGGAACACGAAGCACG 24204 || | ||||| | | ||||||||||||| ||||||| || | |||||| Sbjct 431 TCGCGCGCCGCCTGGACCTGATGTTCCCCGGCTACTTCGCCGGCG------CCAAGCACA 484 Query 24205 ACCATTACAAGGACTTCGGCTATCCGGAGACCCTGTCTTTCACGCAGGTCTACCGGATGT 24264 |||| ||| ||||||||||||||||| | || | ||| | | || |||| |||| Sbjct 485 ACCACTACGCCGACTTCGGCTATCCGGACTCGGTGACGTTCGCCCTGGCCTACGACATGT 544 Query 24265 ACTGCCGGAACGGCGTGGCGGCCGCCGGCGTCGATAAGACGATCCGCAAGACCTGGCAGG 24324 || ||| ||||| | || ||||| | || | ||||| || |||||||||||||| Sbjct 545 ACGTCCGCAACGGTCTCGCCGCCGCTGCGGTGAACAAGACTGTCGCCAAGACCTGGCAGG 604 Query 24325 ACAATCCGTTCCTCCTTGAAAAGGAGCGCGACGGCTCGCAGGGCAGCCAGGACGACGAAA 24384 |||| || ||| ||| || ||||||||||| || || || || | | ||| | Sbjct 605 ACAACCCCTTCGTCCAGGAGTTTCAGCGCGACGGCACGGAGTCGGGCGAGCAGGGCGAGA 664 Query 24385 CGACGCTGGAAAAGGAAATCCGCCAGCGCTTCGACGATCTCCGGCTCTGG 24434 | | | ||||||||| |||||| || ||||| | | ||||||||| Sbjct 665 CCAAGACGGAAAAGGACATCCGCGTCCGGTTCGAGGGGCGGCGGCTCTGG 714 >seq16013 Length=2360 Score = 113 bits (124), Expect = 1e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18113 CAGCGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAG 18172 || || ||| ||||| || ||||| ||||||||| | ||| || ||| ||||||||| Sbjct 2352 CAACGACAACCGGGTGAACGAGATTTCCGAGATCAGCCGCGGATTAAAGACGCTCGCCAA 2293 Query 18173 AGAGCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAG-AGCAGAG 18231 |||||| | | || | ||| ||||||||| || || |||||| ||| | | Sbjct 2292 GGAGCTCTCGGTGCCGGTGATCGCGCTCTCGCAGCTTTCGCGTGCGGTCGAGCAGC-GCG 2234 Query 18232 AGGATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCG 18291 |||| ||||| || | ||||| ||||| ||||| || || |||||||||||||||| | Sbjct 2233 AGGACAAGCGCCCGATGCTCTCGGACCTGCGCGAATCGGGCTCGATCGAGCAGGACGCGG 2174 Query 18292 ACATGATCGCGTTCTTGTTCCGTGAGGCCTACTACC 18327 ||||| | ||| | | || || | |||||||| Sbjct 2173 ACATGGTGTGGTTTGTCTATCGCGACGACTACTACC 2138 >seq11482 Length=9116 Score = 111 bits (122), Expect = 5e-20 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18132 GAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGATATCGCCG-T 18190 |||||| |||||||||| ||||| | ||| ||||||||| ||||||| | |||| | Sbjct 4625 GAGATCACCGAGATCACAACCGGCCTCAAGGCGCTCGCCAAGGAGCTCGCGGT-GCCGAT 4567 Query 18191 CGTTTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCGACCTCTTCT 18250 | | |||||||||||| || ||||||||| | || || ||||| || | || Sbjct 4566 CATCGCGCTGTCGCAGCTCTCCCGCCAGGTCGAGAGCCGCGACGACAAGCGCCCGCAACT 4507 Query 18251 CTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGCGTTCTTGTT 18310 | | ||||| ||||| || || |||||||||||||||||||| | | |||| | | Sbjct 4506 CGCCGACCTGCGCGAATCGGGCTCGATCGAGCAGGACGCCGACGTCGTGATGTTCATCTA 4447 Query 18311 CCGTGAGGCCTACTACCT 18328 ||| || | |||||||| Sbjct 4446 CCGCGACGAGTACTACCT 4429 >seq1895 Length=5816 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 2329 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 2270 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 2269 CTGCCCCCGCAACCA 2255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162493486042050