Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq106 367 6e-97 seq13239 273 1e-68 >seq106 Length=4709 Score = 367 bits (406), Expect = 6e-97 Identities = 537/757 (71%), Gaps = 7/757 (1%) Strand=Plus/Minus Query 65758 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 65817 |||| ||||| ||| || ||| ||| || |||||||| ||| ||| | || || Sbjct 3597 CCACGGGCTCGCTCGGGCTCGACATCGCGCTCGGCATCGGCGGGCTGCCGCGCGGGCGCA 3538 Query 65818 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 65877 | || || |||||||| || ||||| || || ||| | || || || || |||||| Sbjct 3537 TCGTCGAGATCTACGGGCCGGAATCCTCCGGCAAGACCACGCTCGCGCTGCATACGGTGG 3478 Query 65878 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 65937 || | ||||||||| ||| |||| | ||||| ||||||||| |||||| | || |||| Sbjct 3477 CCGAGGCGCAGAAGCGCGGCGGCATCTGCGCCTTCATCGACGCCGAGCACGCGCTCGACC 3418 Query 65938 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 65997 | |||||| |||||| || |||||||| ||||| || | ||||||||| Sbjct 3417 CGATCTACGCCCGCAAGCTCGGCGTCAACCTCGACGACCTCCTGATCTCGCAGCCGGACG 3358 Query 65998 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--T 66055 | ||||||||||| || |||||| ||| || || || || | | ||| | | Sbjct 3357 CCGGCGAGCAGGCGCTCGAGATCTGCGACACGCTGGTGCGCTCGGGTG--CCGTCGACGT 3300 Query 66056 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66115 ||||||| || || || ||||| ||| |||||| ||||||||||| ||||| || || Sbjct 3299 GCTCGTCGTCGATTCGGTCGCGGCGCTGACGCCGCGGGCCGAGCTCGAGGGCGAGATGGG 3240 Query 66116 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66175 || | ||||||||| |||||||| ||| ||||| ||||||||||||||| Sbjct 3239 TGATTCGCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGC 3180 Query 66176 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66235 | | ||||| | | || || || | ||| |||||||| | || ||||||||| Sbjct 3179 CTCGATCTCGAAGTCGAAGACCATGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 3120 Query 66236 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 66295 | || | | |||| ||||||||||||||||||||| || | | ||||||||| Sbjct 3119 CGTGATGTTCGGCAGCCC---CGAGACCACCACGGGCGGCAACGCGCTCAAGTTCTACGC 3063 Query 66296 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66355 ||| |||||| | || |||||||||||| | | |||| |||| |||| ||||| Sbjct 3062 CTCCGTCCGCCTCGACATCCGTCGCATCGGCGCGATCAAGGCGCGCGACGAGGTCGTCGG 3003 Query 66356 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 66415 ||||| ||||| || ||||| || ||||||||||| ||||||||| |||| | ||| Sbjct 3002 CAACCAGACCCGCGTCAAGGTGGTGAAGAACAAGCTCGCCCCGCCGTTCCGCGAGATCGA 2943 Query 66416 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 66475 |||| | || ||||||| |||||||||||| | ||| ||| |||| || | ||| Sbjct 2942 GTTCGACATCATGTACGGCGAGGGCATCTCGAAGCTCGGCGAGCTCGTCGATCTCGGCGT 2883 Query 66476 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 66512 | ||| | | | ||||| |||||||||||| Sbjct 2882 CAAGGCCGGCATCATCGACAAGTCCGGCGCCTGGTTC 2846 >seq13239 Length=1369 Score = 273 bits (302), Expect = 1e-68 Identities = 517/756 (68%), Gaps = 20/756 (3%) Strand=Plus/Minus Query 65700 TTCGGCGCCGGATCGGCTATGAAGCTGGGTGACAAGCCACAGACTGTGGACGTC------ 65753 |||||| || ||||| ||||||||||| ||| |||| || | ||| Sbjct 776 TTCGGCAAGGGTTCGGCGATGAAGCTGGGCTCGAAGG---AGACGATGCAGGTCGAGGCG 720 Query 65754 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65813 || | |||||||| ||| || ||| ||| || |||||||| || | || | |||| Sbjct 719 ATCTCGACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCATCGGCGGCTTGCCCAAGGGC 660 Query 65814 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65873 || ||| | || |||| ||||| ||| || || ||| | || || ||||| | Sbjct 659 CGCGTGATCGAGGTCTATGGCCCGGAAAGCTCGGGCAAGACGACGCTCGCGCTCCATGTC 600 Query 65874 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65933 | ||| | ||||||||||| || |||| ||| |||| | |||| || || || | || Sbjct 599 ATCGCCGAGGCGCAGAAGGCGGGCGGCACCGCGGCCTTCGTCGATGCCGAACATGCGCTC 540 Query 65934 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65993 || || | || |||||| |||||| || ||| ||||| | || | || ||||| Sbjct 539 GATCCGGTCTATGCCAAGAAGCTCGGGGTCGACATCGACGAGCTGATCGTTTCGCAGCCC 480 Query 65994 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66053 ||||| ||||| ||||| || |||||| ||| || || || || | | | Sbjct 479 GACACCGGCGAACAGGCGCTCGAGATCACCGACACGCTGGTGCGCTCGAACGCGATCGAC 420 Query 66054 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 66113 | | || || ||||| |||||||| |||||||||||||||||| |||| ||||| || Sbjct 419 GTGCTGGTGGTCGACTCGGTGGCGGCGCTGGTGCCGCGCGCCGAGATCGAGGGCGAGATG 360 Query 66114 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACC 66173 || || |||||||||||||| || || || ||| ||| | |||||||||| ||| Sbjct 359 GGCGATTCGCACGTCGGCCTGCAGGCCCGGCTGATGAGCCAGTCGCTGCGCAAGCTGACC 300 Query 66174 GGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAG 66230 ||| | ||| | || | || || | ||| ||| |||||||| ||||| |||| Sbjct 299 GGCTCGATCAACCGCTCGAAGTGCATGGTGA---TCTTCATCAACCAGCTGCGCATGAAG 243 Query 66231 ATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTC 66290 |||| ||| |||||| ||||||||| || |||||||| || | | |||| Sbjct 242 CTCGG---GGTGATGTACGGCAATCCCGAGACCACGACCGGCGGCAACGCACTCAAGTTC 186 Query 66291 TACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGAGGC 66349 || || || || | || |||| |||| || | | || ||||| |||| ||| Sbjct 185 TATGCGAGCGTGCGGCTCGACATCCGCCGCACCGGC-CAGATCAAGGACCGCGACGAGAT 127 Query 66350 TGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAA 66409 |||||||| ||| || |||||||| |||||||||||| | || ||||| | | Sbjct 126 CATCGGCAACACCACGCGCGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCA 67 Query 66410 CGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTC 66445 | ||||||| | || ||||||| ||||||||||| Sbjct 66 GGTCGAGTTCGACATCATGTACGGCGAGGGCATCTC 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242374462864325