Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq14182 165 2e-35 seq334 156 1e-32 seq11472 140 8e-28 seq7244 104 5e-17 seq3654 91.5 3e-13 >seq14182 Length=2243 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || |||||||| || |||||||| || || || || || | ||||||||| Sbjct 583 ACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCATCTTCC 642 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| || || || ||||||||||||| || ||||||||||| Sbjct 643 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGA 702 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || |||||||| ||| || ||||| || ||||| ||||| Sbjct 703 ATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGATGGTCTTG 762 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| | ||||| Sbjct 763 CCAGTCAGTGTCTTGACAAAGATTTGCAT 791 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| || || ||||| || |||||||| || || || || || | ||||||||| Sbjct 1331 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTGCGGCCATCTTCC 1390 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||||||||||| |||||||| || || || |||||||| || Sbjct 1391 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGG 1431 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| || ||||| || |||||||| ||| || ||||| Sbjct 1208 CCCTCCTTGTCCTGAATCTTGCTCTTGACGTTCTCAATGGTGTCGCTGCTCTCCACCTCC 1267 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 1268 AGTGTGATGGTCTTGCCAGTGAGCGTCTTGACAAAGATCTGCAT 1311 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| || || || || || | |||||| Sbjct 1860 AGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTGCGGCCATCT 1919 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| || ||||| || || || |||||||| || Sbjct 1920 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 1963 >seq334 Length=28022 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || ||||| |||||||| || |||||||| || || || ||||| | ||||| ||| Sbjct 27851 ACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCC 27792 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| || ||||| || || || |||||||| || | || ||||||||||| Sbjct 27791 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 27732 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || ||||| || ||| || ||||| |||||||| ||||| Sbjct 27731 ATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGATGGTCTTG 27672 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| | ||||| Sbjct 27671 CCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| || || || || || | |||||| Sbjct 27626 AGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGAGTGCGGCCATCT 27567 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| || ||||| |||||||| || Sbjct 27566 TCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGGGG 27523 >seq11472 Length=8128 Score = 140 bits (154), Expect = 8e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || || |||||||| || |||||||| || || ||||| Sbjct 5156 TCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAG 5097 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| |||||||||||||| |||||||| || || || ||||||||||||| Sbjct 5096 GGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAAT 5037 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 |||||||| ||||||||||| || || || || |||||||| Sbjct 5036 CCCTTCCTTATCCTGGATCTTGCTCTTTACATTCTCAATGGTGTC 4992 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || || |||||||| || |||||||| || || ||||| Sbjct 6057 TCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAG 5998 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||| | ||||| |||||||||||||| || ||||| || || || ||||||||||||| Sbjct 5997 GGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAA 5939 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || || |||||||| || ||||||||||| || ||||| Sbjct 5596 TCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTATAGTCTGCAAG 5537 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || | ||||| |||||||||||||| || ||||| | || || ||||||||||| Sbjct 5536 AGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGG 5480 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || || || ||||| || |||||||| || || ||||| Sbjct 6520 TCCACGCAGACGCAGTACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCAAG 6461 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || | ||||| |||||||||||||| || ||||| || || || ||||||||||||| Sbjct 6460 AGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAA 6402 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| |||||||||||||| ||||| || ||||||||||| ||| || |||||| Sbjct 6627 CCTTCTTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCGCTGCTCTCCACCTCG 6568 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || | ||||| ||||| | |||||| Sbjct 6567 AGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6524 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || || ||||| || |||||||| || || ||||| || | ||||| ||| Sbjct 6934 ACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGACCATCCTCC 6875 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||||||||||| || ||||| || || || ||||||||||||| Sbjct 6874 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAA 6832 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || || || ||||| || |||||||| || || ||||| Sbjct 7537 TCCACGCAGACGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCAAG 7478 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || | |||||||||||||||||||| || ||||| || || || |||||||| || Sbjct 7477 TGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 7421 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || || |||||||||||||| ||||| || || |||||||| ||| || |||||| Sbjct 6164 CCCTCTTTGTCCTGGATCTTGCTCTTCACATTCTCAATGGTGTCGCTGCTCTCCACCTCG 6105 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || | ||||| ||||| | |||||| Sbjct 6104 AGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 6061 >seq7244 Length=2690 Score = 104 bits (114), Expect = 5e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || | || ||||| || ||||||||||| || |||||||| | |||||| Sbjct 613 AGTACAAGATGCAAGGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCT 672 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || | |||||| || || || || | || ||||||||| Sbjct 673 TCCAGCTGCTTGCCGGCAAATATCAAGCGTTGCTGATCCGGTGGGATGCCCTCCTTGTCC 732 Query 211023 TG-GATC 211028 || |||| Sbjct 733 TGCGATC 739 >seq3654 Length=3311 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 178236 TGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGC 178295 |||| |||| | ||| ||| ||| |||| || | || || |||||||||||||||| Sbjct 1329 TGTACAGCTTGTTGAACTCCTCTCCCCAGACCTCTGCCAGGCCTGGAGCCTCATTGGGGC 1388 Query 178296 AGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGA 178355 |||| |||||||| | ||| | || |||||| |||||||| || ||| | |||||| Sbjct 1389 AGAACAGACTCCAGTCTTGGTCCTGCTCCACTCGCTTCATGAACAGATCATTGATCCAGA 1448 Query 178356 TGGCATAGAA 178365 | ||||||| Sbjct 1449 GGCCATAGAA 1458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158911032222125