Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7066 230 6e-55 seq11472 107 5e-18 seq3385 107 5e-18 seq14742 100 7e-16 seq9062 100 7e-16 seq6374 100 7e-16 seq24 96.9 8e-15 seq334 87.8 4e-12 seq13206 84.2 5e-11 >seq7066 Length=502 Score = 230 bits (254), Expect = 6e-55 Identities = 165/190 (87%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 3864 GTTCCGGGAAAACTAATATTTGAAAGTATTAGTATGAATAAACAAAGACTGAAAATGGGC 3923 ||||| |||||||| || ||||||||||||| ||| || || |||| || ||||| ||| Sbjct 103 GTTCCTGGAAAACTGATGTTTGAAAGTATTAATATAAACAAGCAAAAGCTAAAAATAGGC 162 Query 3924 ATAGTAGAAACTAGGCCACTATAATATCTCAAAATTCTAGTTTTATACCTATCGTAAACA 3983 ||||||||||||| || |||||||| || ||||||| |||||||||||||||||||||| Sbjct 163 ATAGTAGAAACTAAACCGCTATAATACCTTAAAATTCGAGTTTTATACCTATCGTAAACA 222 Query 3984 CAACCTATACaaaaaaaCAAACCGCTTGATACTATACCGTGGCTAAGCATTaaaaaaaCA 4043 |||||||||||||||||||| || || ||||| ||||| || ||||||||||||||||| Sbjct 223 CAACCTATACAAAAAAACAAGCCACTCGATACAATACCATGACTAAGCATTAAAAAAACG 282 Query 4044 CTACCGCCTA 4053 ||||| |||| Sbjct 283 CTACCACCTA 292 Score = 172 bits (190), Expect = 1e-37 Identities = 119/135 (88%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1054 GTGATTCCGATATTTTGTGACGCTACTTAtttttttttACCCCTTGTTTACACTTTATGT 1113 |||||||| ||||||||||||||||| |||||||||||||| ||||||| ||| ||||| Sbjct 482 GTGATTCCAATATTTTGTGACGCTACATATTTTTTTTTACCATTTGTTTATACTCTATGT 423 Query 1114 TTATTAGGGATAATATATACTTGTTGTAGTACCATTAGGCAGGTTGATTTAAAGAAGGTT 1173 |||||||| |||||||||||||||||||| || ||||| || |||||||| || ||||| Sbjct 422 TTATTAGGTATAATATATACTTGTTGTAGCACTATTAGACAAGTTGATTTGAAAAAGGTA 363 Query 1174 ATAGCTTATGCTTCA 1188 || || ||||||||| Sbjct 362 ATTGCATATGCTTCA 348 >seq11472 Length=8128 Score = 107 bits (118), Expect = 5e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || || || || ||||| || || |||| ||||| || || | || Sbjct 5153 ACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGT 5094 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 5093 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATCCC 5034 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||| || |||||||| ||| ||| || |||||||| Sbjct 5033 TTCCTTATCCTGGATCTTGCTCTTTACATTCTCAATGGTGTC 4992 >seq3385 Length=505 Score = 107 bits (118), Expect = 5e-18 Identities = 94/113 (83%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 394 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGTGGCAG 336 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| |||||||||||||||| ||||| || |||| ||||| Sbjct 335 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGA 283 >seq14742 Length=52551 Score = 100 bits (110), Expect = 7e-16 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAA-AGGGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | |||||| | ||||| Sbjct 3691 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTTCTACGGAAGGCAG 3633 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||||||||||| |||| ||| ||| Sbjct 3632 CAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAAT 3589 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| | || ||| |||||||||||||| ||||| |||| | | Sbjct 3031 TGGTAAGGTTCTTCGTGTATCATCGAATTAAACCACATAATCCACTGCTTGTGCGGGTCC 3090 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 3091 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGATACTTAACGC 3150 Query 7855 GTTAGCTT 7862 |||||||| Sbjct 3151 GTTAGCTT 3158 >seq9062 Length=10748 Score = 100 bits (110), Expect = 7e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| ||||| ||||| || || || |||||||| ||||| Sbjct 4549 GAAAATTTGACCATCAGTAATAGAAATAACGTTTGTTGGAATGTACGCAGAAACGTCACC 4608 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | |||| ||||| || |||||||| || || Sbjct 4609 TTCTTGAGTTTCTACTACAGGTAATGCAGT 4638 >seq6374 Length=7433 Score = 100 bits (110), Expect = 7e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| ||||| ||||| || || || |||||||| ||||| Sbjct 16 GAAAATTTGACCATCAGTAATAGAAATAACGTTTGTTGGAATGTACGCAGAAACGTCACC 75 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | |||| ||||| || |||||||| || || Sbjct 76 TTCTTGAGTTTCTACTACAGGTAATGCAGT 105 >seq24 Length=14409 Score = 96.9 bits (106), Expect = 8e-15 Identities = 105/138 (76%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || | || ||||||| |||| ||||| || ||||||||||||| |||||||||| Sbjct 3916 ATGTCAAAGGCTGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 3857 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || ||||||||||||| |||||| |||| | | |||| || Sbjct 3856 TGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGG 3797 Query 7845 AT-ATTTACGCGTTAGCT 7861 || || | ||||||||| Sbjct 3796 ATGCTTAATGCGTTAGCT 3779 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/113 (81%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||| |||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 3241 TGAGAGGATGACCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 3299 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 3300 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGA 3352 >seq334 Length=28022 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || || ||||| || || || || |||| ||||| || || | ||| Sbjct 27636 ACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGAGT 27577 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || ||||| ||||| || || || || Sbjct 27576 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGGGGGATGCC 27517 Query 225612 T 225612 | Sbjct 27516 T 27516 >seq13206 Length=631 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||| ||||| | |||| || || || ||| | ||| | Sbjct 616 TGAGAGGATGATCAGCCACACTGGAACTGAGACACGGTCC-AGACTCCTACGGGTGGCTG 558 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 |||||| ||||||| ||||||||| |||| | ||||| || |||| Sbjct 557 CAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCAGCAATG 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192283293260150