Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq11390 197 4e-46 seq312 190 7e-44 >seq11390 Length=1714 Score = 197 bits (218), Expect = 4e-46 Identities = 247/339 (73%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 40067 GCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTC 40126 ||||||||||| | |||||||| |||||| ||||| | || ||||| ||| | Sbjct 644 GCGCGCCTTGAGCTTGCCGAAGGTGATGATCTGCGCGACGTGATCGCTGCCGTATTTCGC 585 Query 40127 GGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGG 40186 ||||| | |||||| ||||| || ||| || ||||||||||| | |||||| Sbjct 584 CTGCACGTAGCGGATCACCTCGCCGCGCCGCGTTTCGCAAAAGTCGATGTCGAAGTCGGG 525 Query 40187 CATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTC 40246 ||| || |||||||||||||| ||||| || ||||| | || ||| || | ||| || Sbjct 524 CATCGAGACGCGCTCGGGGTTGAGGAAGCGTTCGAACAGCAGGCCGAGCTTCAAGGGATC 465 Query 40247 CAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGG 40306 || || |||||| ||| |||| ||| |||||| || ||||||| || || || Sbjct 464 GAGATCGGTGATGGTGAGCGCCCAGGCCACCGCCGAACCCGCGCCCGAGCCGCGCCCCGG 405 Query 40307 TCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTA 40366 || ||| | ||| | ||||||||||| ||||||||||||||||| ||||||||| Sbjct 404 CCCCACCGGGATGCCCTGTTCCTTGGCCCACTTGATGAAGTCGGCGACGATCAGGAAGTA 345 Query 40367 GGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTA 40405 | || || |||| || | ||||| |||||||||||| Sbjct 344 GCCGGGAAAGCCCATCTTCACGATCACGTCGATCTCGTA 306 Score = 113 bits (124), Expect = 1e-20 Identities = 336/510 (66%), Gaps = 39/510 (8%) Strand=Plus/Minus Query 39201 TCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGA 39260 ||||| |||| |||||| |||||||||||||||| ||||| ||||||||||| Sbjct 1465 TCCTTCGCCATCTCCTCGGCGATCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCTCCG 1406 Query 39261 CCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACC 39320 || |||||||| || || | || ||| || || | |||||| |||||||||| || Sbjct 1405 CCAAGGCTGTATCCCGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGGTAGACGATG 1346 Query 39321 AGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGATCGGC 39380 | ||||||||| | ||||| | | ||| ||| | | |||| | Sbjct 1345 ATGCCGTAGGTCTCGGCGAGGATGCCCTCGAGCTTCTC----------GTGCGGATATTC 1296 Query 39381 GTGATCGCCTGCT-GCCCGTTCTTGCGGAGGGCGTAGTTCG---TGTGCGAGCCCACGCC 39436 ||||| | || ||||| |||||| || || | || ||| | | Sbjct 1295 --GATCGGCACCTCGCCCG-CCTTGCGCTGGCCGAACAGCGGAATGT---------TGTC 1248 Query 39437 CATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGAAGTTGTCCGGCTT 39496 |||||| ||||| ||||| |||| ||||| ||| ||||||| |||| ||| |||||| Sbjct 1247 CATCGGCCCCGGGCGGTAGAGCGAGACGAGCGCGATGATGTCGCCGAAATTGGTCGGCTT 1188 Query 39497 CAGCAGGCGGAGCAGTG-AGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGT 39555 || | |||| ||| ||||||| | || ||||||||||| || | ||||| Sbjct 1187 CACCGCCTTGAGC-GTGCGGCGCATCCCTTCGGATTCGAGCTGGAACACGCCCACCGTGT 1129 Query 39556 CGCC--CCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTC 39613 ||| |||| || |||||||||| || ||||| ||| |||| || || || Sbjct 1128 TGCCCGCCTG--CATCAGCTCGTAGACTGCCGGATCGTCGAGCCCGATGGCGTCGAGATC 1071 Query 39614 GA-CGTGCT-CCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGG 39671 || | | | || | || | || || |||||||| | || || | || ||| Sbjct 1070 GATGGCGATGCCGCGCGCCGCGAGCAGA-----TCGACCGCCTTGCGCAGCACCGAGAGC 1016 Query 39672 TTCCGGAGCCCGAGGAAGTCCATCTTCACC 39701 || |||||||||||||| | ||||||| Sbjct 1015 GTCTTCAGCCCGAGGAAGTCGAACTTCACC 986 >seq312 Length=5289 Score = 190 bits (210), Expect = 7e-44 Identities = 283/394 (72%), Gaps = 13/394 (3%) Strand=Plus/Minus Query 40018 CGACCTGGA---AGGGCTTGTCCAGCACGCGCGCCG-CGTCCTTCATCGCGTTGCGCGCC 40073 |||||||| ||||| | | ||||||||| |||| |||| || | || ||| ||| Sbjct 1141 CGACCTGGCCATAGGGCATCTGCAGCACGCG-GCCGACGTCGCGCAGCACGGCGCGGGCC 1083 Query 40074 TTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACG 40133 | | | |||||||| |||||| || |||| || |||||||| | |||| Sbjct 1082 TGCAGCGTGCCGAAGGTGATGATCTGCGCCACCTGCTCGCGGCCGTACTTGCCCTGGACG 1023 Query 40134 TACCTGATCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGG 40191 || | |||||| ||| | || || || | || |||||||||||| | ||||||||| | Sbjct 1022 TAGCGGATCACCTCGTCGCGCCGGTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCG 965 Query 40192 ACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGT 40251 |||||||||||||||| ||||| |||||||| | ||| || | || ||||| |||| Sbjct 964 ACACGCGCTCGGGGTTGAGGAAGCGCTCGAACAGTAGCGCGAAGCGCATCGGGTCGAGGT 905 Query 40252 CTGTGATGCCG--AGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCC 40309 | || | ||| || | |||||||| ||||| || || ||||||| || || || || Sbjct 904 CGGTCA--CCGTCAGCGAATAGGCGACGAGCGAGCCCGCGCCCGAGCCGCGGCCCGGCCC 847 Query 40310 GACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGA 40369 ||| | || | | |||| ||||| ||||||||||||||||| ||||||||| Sbjct 846 GACGGGAATCCCTTGCGCCTTCGCCCACTTGATGAAGTCGGCGACGATGAGGAAGTAGCC 787 Query 40370 CGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 |||||| || | || |||| | ||||| |||| Sbjct 786 GGGGAACTTCATCCGGGTGATGACGTCGAGCTCG 753 Score = 140 bits (154), Expect = 1e-28 Identities = 469/715 (66%), Gaps = 45/715 (6%) Strand=Plus/Minus Query 39014 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39073 ||| || | | ||||| |||| |||| || ||| ||||| ||||| ||||||||| ||| Sbjct 2097 GGCGGCGAGGAACTCGACCGGATAGTTCGCCTTGAGGTAGGCCGTCTGGTAGGCGACGAG 2038 Query 39074 ACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 39133 |||| || || | ||||| ||||||||| |||| ||||||| |||||| || Sbjct 2037 GGCGTAGGCTGCGGCGTGCGACTTGTTGAAACCGTAGTCGGCGAATTTCGCGAGCAGATC 1978 Query 39134 CCACACCGCCTGGATGGCACCGTCCGAGT--AGCCTCGCTCGCGCG-CTCCCTTCTGGAA 39190 | | ||| | | | | ||| | | || |||| || | || | |||| ||| Sbjct 1977 GAAGATCGCGTCG--GCCGCCG-CGGCGTCCAGCCCCGAGGCCCCGGCGCCCTCGACGAA 1921 Query 39191 GTTCACGAACTCCTTGGCCAGAACCTCGGGCTT---CTTCTTGCCCATGGCTCGGCGGAG 39247 | |||| || | ||| ||| | ||| ||||||||||||||| ||||| || Sbjct 1920 GCGCACGCGCTGGGCGTCCAT---CTCCGACTTGATCTTCTTGCCCATGGCGCGGCGCAG 1864 Query 39248 AAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTC 39307 |||||||||| || || ||| || | |||||||| || || | ||||||||| Sbjct 1863 CAGGTCGGCCTCGCCGAGCGAGTAGCCCGACAGGATCTGCGCGATCTGCATCACCTGCTC 1804 Query 39308 CTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCCTCCACCTC 39367 |||||||| || | ||||||||| | ||| | |||||| || | Sbjct 1803 CTGGTAGACGATGATGCCGTAGGTCTCCTTCAG---------CACCGGCTCGAGCAGC-- 1755 Query 39368 GGGGTGGATCGGCGT-GATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCG---TGT 39423 || ||||| | || | | | | || |||| ||| || | ||||| || ||| Sbjct 1754 -GGATGGAT-GTAGTCGGGCACTTCGTGGCCGTGCTTTCGCGCGCCGTAGACCGGGATGT 1697 Query 39424 GCGAGCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCCTCGA 39483 || ||||||| || || ||||| |||||||||| ||| |||||||||||| Sbjct 1696 TCG---------CCATCGGGCCGGGGCGGTAGAGCGCGACGAGCGCGATGATGTCCTCGA 1646 Query 39484 AGTTGTCCGGCTTCA-GCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGGAAG 39542 || ||| ||||| | | ||| || | |||||| | || ||||||||||| Sbjct 1645 AGCGGTCGGGCTTGATGTCGGC-GATCGCCTTGCGCATGCCCATGCTTTCGAGCTGGAAC 1587 Query 39543 ACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATG 39602 || || || |||||| | ||| |||| |||||| ||| |||||| | ||| | Sbjct 1586 ACGCCGACGGTCTCGCCCTTCTGCAGGAGCTTGTAGGTGGCAGGGTCGTCGAACGGCAGC 1527 Query 39603 TTCTCCAGGTCGA-CGTGCTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCCAT 39661 | | || |||| || | | || || |||| ||| ||||| ||| | || Sbjct 1526 GCCGCGAGATCGATCGCG-ACGCCGCG--CCGCGC-GATCAGCTCGAGCGCCTTCTGCAG 1471 Query 39662 GATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCG 39716 | || ||| || ||| ||||||||||| | |||||| |||| ||||||| Sbjct 1470 CACGGTCAGGGTCTTGAGGCCGAGGAAGTCGAACTTCACGAGGCCCGCGCTCTCG 1416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160109945371800