Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq14742 538 4e-148 >seq14742 Length=52551 Score = 538 bits (596), Expect = 4e-148 Identities = 717/992 (72%), Gaps = 8/992 (1%) Strand=Plus/Plus Query 165182 AGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGC 165241 ||||||||| || ||||| || ||||| || ||||||||||| || ||||||| |||| Sbjct 37791 AGACCGTTTTGTATTTGTAGGTTGGTCAGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGC 37850 Query 165242 TCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGC 165301 ||||| |||||| ||||||| || ||||| || || ||||| || || || | || Sbjct 37851 ACTTGGAGGTTGGTTTACTGGTACAACTTTTGTAACATCATGGTACACACATGGTTTAGC 37910 Query 165302 GAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGC 165361 ||| ||| | || ||| ||||| | || || || ||||| ||||| ||| || Sbjct 37911 TTCTTCATATTTAGAAGGTTGTAACTTCTTAACAGCAGCTGTTTCAACTCCTGCAAACAG 37970 Query 165362 TATGGGTCATTCTCTTCTGCTTCT-ATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCT 165420 ||||| ||| ||| || | |||| |||||| ||||| | ||||| ||||| | || | Sbjct 37971 TATGGCTCACTCT-TTATTATTCTTATGGGGACCTGAAGCACAAGGTGACTTTACTCGTT 38029 Query 165421 GGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAG 165480 |||| ||| | || || || ||||| ||| | || | || ||| | || | | || | Sbjct 38030 GGTGTCAATTAGGTGGTCTATGGACATTTATTGCTTTACATGGATCTTTCGGTTTAATTG 38089 Query 165481 GTTTCATGCTTCGCCAGTTTGAACTGGCACG---ACTTATCGGTATTCGTCCTTACAATG 165537 | || ||| | || || |||||| | || || | ||| | | ||||| ||||||| Sbjct 38090 GATTTATGTTACGTCAATTTGAAATTGCTCGTTCAGTTAA---TTTACGTCCATACAATG 38146 Query 165538 CTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGG 165597 ||||||||||||| | |||||| | || || ||| ||||| | || || || | | Sbjct 38147 CTATTGCTTTCTCGGCGCCTATTTCAGTTTTTGTTTCAGTTTTCTTAATTTACCCATTAG 38206 Query 165598 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 165657 ||||||| |||||| || || || || || || ||||| || ||||| ||| | Sbjct 38207 GACAATCTGGCTGGTTTTTTGCTCCTAGTTTTGGTGTAGCAGCTATTTTCCGTTTCATTT 38266 Query 165658 TCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAG 165717 | || ||||||| |||||||||||||| | || || || ||||||||||| ||||||| Sbjct 38267 TATTTTTCCAAGGCTTCCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTAGCAG 38326 Query 165718 GTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 165777 || | ||||| | || | | | ||| ||||| |||| ||| || || || || || | Sbjct 38327 GTGTTTTAGGAGCTGCTCTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTAT 38386 Query 165778 ATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAA 165837 |||||||||||| || ||||| ||| |||||| | || || | || |||| Sbjct 38387 TTGAAGATGGTGACGGTGCTAACACATTCCGTGCATTTAACCCAACACAAGCTGAAGAAA 38446 Query 165838 CTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCA 165897 |||| || ||||| || || ||||||||||||||||| |||||||| |||||||| | Sbjct 38447 CTTACTCAATGGTAACAGCGAACCGTTTCTGGTCTCAAATTTTTGGGGTTGCTTTCTCAA 38506 Query 165898 ATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTT 165957 |||| ||||||||||||||||| ||||| |||||||||| | || ||||||| Sbjct 38507 ATAAACGTTGGCTTCACTTCTTCATGCTTCTTGTTCCTGTTGTAGGTCTTTGGATGTCAG 38566 Query 165958 CTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGA 166017 |||||||| | |||| | || | ||| | ||||||||||| || || || || || | Sbjct 38567 CTATTGGTGTAGTTGGGTTAGCTTTAAATTTACGTGCTTATGACTTCGTTTCACAAGAAA 38626 Query 166018 TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATG 166077 || | || ||||||||||| || || ||||| ||||| || ||||| || | | |||| Sbjct 38627 TTCGTGCAGCTGAGGATCCGGAATTCGAAACTTTCTACACAAAAAATATTATTTTAAATG 38686 Query 166078 AAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTG 166137 |||| ||||||| ||| ||||| | ||||||||| ||||| |||| ||||||| Sbjct 38687 AAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCACATGAACGTCTTGTATTCCCTG 38746 Query 166138 AAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 ||||||| || || | || || || || ||| Sbjct 38747 AAGAAGTATTACCTCGTGGTAATGCTCTATAA 38778 Score = 277 bits (306), Expect = 2e-69 Identities = 270/348 (78%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 164432 GTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGT 164491 || ||||| |||||||||||||| || |||||||| ||||| ||| | || || || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 164492 GTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTT 164551 || ||||| ||||| | ||| ||||||||||||||| | || ||||| || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 164552 CGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAA 164611 ||||| || || ||||| || || ||| | || ||||| || ||||| ||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 164612 ACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCC 164671 || |||||||| || || || || ||||||||||| ||| | || |||||||||||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 164672 TTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 164731 ||||||||||| ||||| | ||||||||| | || || ||||| || || ||||| ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 164732 TTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTC 164779 || |||||| | || || || |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 246 bits (272), Expect = 3e-60 Identities = 289/383 (75%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 163919 TGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTC 163978 |||| || || ||| | ||| | ||| || || || ||||| || ||||||||||| Sbjct 12280 TGGGCACGTTTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTC 12221 Query 163979 GGCGTCCTGATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCA 164036 || || | ||||| |||| | | | |||| ||| | ||| ||||||||||| |||| Sbjct 12220 GGTGTTATCATGAT-CCCTACATTATTAACAGCTACTTC-TGTATTCATCATCGCTTTCA 12163 Query 164037 TCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGT 164096 ||| ||| ||||| || || |||||||| || || || || || ||||||| | | | Sbjct 12162 TCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTAT 12103 Query 164097 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 | ||||||||||||||||||||||||||| | ||| | || |||||||| ||| | || | Sbjct 12102 ACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATT 12043 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 164216 ||||||| || |||||||| || | | || || ||| | |||||||||||||||| || Sbjct 12042 TCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACC 11983 Query 164217 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTA-TGCTTACATGGGTCGTGAGTGGGAA 164275 || | | || | ||||||| | | || || | |||| ||||||||||||| |||||| Sbjct 11982 AATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTGCT-ACATGGGTCGTGAATGGGAA 11924 Query 164276 CTTTCTTACCGTCTTGGTATGCG 164298 | ||||||||| | |||||||| Sbjct 11923 TTATCTTACCGTTTAGGTATGCG 11901 Score = 140 bits (154), Expect = 4e-28 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 164294 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTC 164353 ||||||||||||||| ||||| ||||||||||| || || || || | |||||| ||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 164354 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGA 164413 | |||||||| |||| ||||||||||||||||||| |||||| | || ||||||||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 164414 ACCTTCAACTACATG 164428 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 164778 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 164837 ||||||||||||| || | | || ||| |||||||| | ||||| ||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 164838 TTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 164897 | ||||||||||| | || |||||||| ||||||||||||||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 164898 CTCTCGACCTTGCTGCTGCTGA 164919 | | ||| | || ||| ||| Sbjct 8165 CATTAGACTTAGCGTCTGTTGA 8144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557541300717000