Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq14742 556 2e-153 seq5813 89.7 6e-13 seq4468 84.2 3e-11 >seq14742 Length=52551 Score = 556 bits (616), Expect = 2e-153 Identities = 744/1021 (73%), Gaps = 10/1021 (1%) Strand=Plus/Plus Query 178836 TGGTTTGATGTACTC-GATGACTGGCTTAAG-CGTGATCGGTTCGTTTTTGTTGGTTGGT 178893 |||||||||| || | ||||||||| ||| | | || || || || ||||| ||||||| Sbjct 37759 TGGTTTGATG-ACGCAGATGACTGG-TTACGTCAAGACCGTTTTGTATTTGTAGGTTGGT 37816 Query 178894 CAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAA 178953 ||||||||||||| |||||| |||||| | ||||| || |||||| | || || |||| Sbjct 37817 CAGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAA 37876 Query 178954 CATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATT 179013 | || || || || ||||| || || || | |||||||| ||| | || || ||||| | Sbjct 37877 CTTTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACT 37936 Query 179014 TCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTC-TA 179072 || | || || ||||| ||||||||||| || | | | || || || || ||| || Sbjct 37937 TCTTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCTTTA-TTATTCTTA 37995 Query 179073 TGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCT 179132 ||||| || ||||| || || || || || ||| ||| | || || |||||| | Sbjct 37996 TGGGGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACA 38055 Query 179133 TTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATC 179192 ||| | || | || || | |||| | | || || || ||| | || || |||||||| Sbjct 38056 TTTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATT 38115 Query 179193 GCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTC 179252 || ||| ||| | | ||||| |||||||| || || || || | || ||| | || Sbjct 38116 GCTCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTT 38175 Query 179253 TTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCG 179312 ||||| || ||||| | || || || | ||||| || ||||| ||||| || Sbjct 38176 TTTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGT 38235 Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| || ||||| |||||||| ||| | | || | || |||||||| |||||||| Sbjct 38236 TTTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACT 38295 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 | ||||| |||||||||||||||||||||||| | | || | || | | ||||| Sbjct 38296 TTAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCT 38355 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 ||||| |||||||| || || |||||| | |||||||| ||||| | || |||||| Sbjct 38356 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTC 38415 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTC 179552 ||||| | || ||||||| || || || || || ||||| || || ||||||||| Sbjct 38416 CGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTC 38475 Query 179553 TGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTG 179612 |||||||| || ||||| | || ||| ||||| |||||||| || ||||| ||| | Sbjct 38476 TGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTT 38535 Query 179613 TTTGTTCCTGTCATGGGTCTTTGGACCTCTAGC-ATTGGTATTATTGGTCTTGCACTTAA 179671 |||||||||| | |||||||||| || ||| |||||| | |||| | || |||| Sbjct 38536 CTTGTTCCTGTTGTAGGTCTTTGGATGTC-AGCTATTGGTGTAGTTGGGTTAGC-TTTAA 38593 Query 179672 CCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCG 179730 ||| | ||||||||||| ||||||||||| || | || || |||||||| || |||| Sbjct 38594 ATTTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCG 38653 Query 179731 AGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAG 179790 | || ||||| || || || || | || ||||||||| | |||||||||||||| | Sbjct 38654 AAACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGC 38713 Query 179791 TCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTC 179850 || |||||||||||| ||||||| |||||||||||||| || | || || |||| Sbjct 38714 AAGACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTC 38773 Query 179851 T 179851 | Sbjct 38774 T 38774 Score = 307 bits (340), Expect = 1e-78 Identities = 277/348 (80%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 178102 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGT 178161 || |||||||| ||||||||||| || |||||||| ||||||||||| || || |||||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 178162 GTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTT 178221 || ||||||||||| | ||| ||| ||||||||||| | || ||||| || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 178222 CGTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 178281 |||||||| || || |||||| | ||| | || ||||| ||||||||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 178282 ACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCC 178341 || |||||||| || ||||| ||||||||||| || || | |||||||||||||| || Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 178342 TTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 178401 ||||||||||| ||||| | ||||||||| | || || ||||| || || ||||| ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 178402 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTC 178449 ||||||||| | ||| || || |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 262 bits (290), Expect = 5e-65 Identities = 269/346 (78%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 177625 AATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCT 177684 || ||| | || |||||||||||||||| | ||||||||||| | | | ||| || Sbjct 12244 AACCGTTTATACATCGGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACAGCTACT 12185 Query 177685 ATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGA 177743 ||||| |||||| |||||||| ||||||| ||||| || || ||||| || || ||||| Sbjct 12184 -TCTGTATTCATCATCGCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGA 12126 Query 177744 ACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTC 177803 || || ||||||| | | || || ||||||||||| |||||||||||||||||| | Sbjct 12125 GCCAGTTTCTGGTTCATTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTAC 12066 Query 177804 TTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTG 177863 || |||||||||||| | || ||||| || || |||||||| | ||| | |||||||| Sbjct 12065 ATCAAACGCTATTGGTTTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTG 12006 Query 177864 GCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTA-TG 177922 | | ||||| |||||||||| |||| | | | | ||||||| | | ||||| | || Sbjct 12005 GTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTG 11946 Query 177923 CATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCG 177968 | |||||||||||||| |||||| | |||||||| |||||||||| Sbjct 11945 C-TACATGGGTCGTGAATGGGAATTATCTTACCGTTTAGGTATGCG 11901 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 177964 ATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTC 178023 |||||||| ||||| |||||| |||||||||||||| || || || |||| |||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 178024 CTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGC 178083 | | |||||| |||| ||||||||||||||||| | |||||| | |||||| ||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 178084 ACCTTCAACTACATG 178098 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 178448 TCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACG 178507 ||||||||||||| || | | || ||| || || | ||||| ||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 178508 TTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCC 178567 | ||||||||||| | ||||||||||| ||||||||||||||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 178568 CTCTTGACCTCGCTGCTGCTGAA 178590 | | ||| | || ||| |||| Sbjct 8165 CATTAGACTTAGCGTCTGTTGAA 8143 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 158116 ATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCGAAG--TGAGAGC 158173 |||||||||||| |||||||||| |||||||| ||||||||||||| | | || | Sbjct 37026 ATGGAAAGGTGGCAGAGTGGTTGAATGCTCTGGTTTTGAAAACCAGCGTGGCTTTAGGGT 37085 Query 158174 TTCCGTGGGTTCGAATCCCACCCTTTCCG 158202 ||| ||||||||||||| ||||||||| Sbjct 37086 CACCGGGGGTTCGAATCCCTCCCTTTCCG 37114 >seq5813 Length=9432 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/85 (84%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 17705 GGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAAG 17764 |||| |||||||||||||||||||| ||| ||||||||||| ||| |||| |||||| || Sbjct 3804 GGGGGTGTAGCTCAGTCGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAG 3745 Query 17765 TCCCTTCAGTCCCGTATGCCACTTT 17789 ||| ||| |||| |||||||| Sbjct 3744 CCCCGTCACTCCC----GCCACTTT 3724 >seq4468 Length=619 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 158205 TCGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGA 158264 |||||| ||||||||| ||||||||| | ||||| ||||||| | |||| |||||||| Sbjct 307 TCGGGGAGTAGCTCAGCCTGGTAGAGCACTGTCTTCGGGAGGCAGGGGCCGGAGGTTCGA 248 Query 158265 ATCCTATCACCCCGAC 158280 ||||| || ||||||| Sbjct 247 ATCCTCTCTCCCCGAC 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596186261446000