Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq14182 141 7e-29 seq334 141 7e-29 seq11472 105 5e-18 >seq14182 Length=2243 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | ||| ||||| || || ||| |||||| ||||||||||| || || Sbjct 565 CCACCACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCC 624 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||| ||||||| ||||||||| || | ||| Sbjct 625 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 684 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||| ||||| ||| ||||| ||| | | | ||||||||| | |||||| Sbjct 685 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACC 744 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || ||||| || || || ||||| || |||||||||||| Sbjct 745 TCCAGTGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCATG 792 Score = 95.1 bits (104), Expect = 9e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | |||||||||||| || || |||||| ||||||||||| || Sbjct 1309 CATGCCACCACGCAGGCGCAACACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 1368 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| ||| | || ||||||||||| || || ||||||| ||||||||| || Sbjct 1369 TGCTAGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 1425 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| || || || |||||| ||||||||||| || Sbjct 1841 CATGCCACCACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 1900 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| ||| | || ||||||||||| || |||||||||| ||||||||| || Sbjct 1901 TGCTAGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 1957 >seq334 Length=28022 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | ||||||||| ||||| ||| |||||| ||||||||||| || Sbjct 27873 CATGCCACCGCGCAGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTC 27814 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| ||||||||| || | Sbjct 27813 TGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 27754 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| ||| ||||| ||| | | | ||||| ||| | || Sbjct 27753 GGGGATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTC 27694 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || || ||||| || ||||||||||| Sbjct 27693 CACCTCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 >seq11472 Length=8128 Score = 105 bits (116), Expect = 5e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| || || ||| |||||| ||||||||||| || Sbjct 5162 CATGCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 5103 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || || ||||||| ||||||||| || | Sbjct 5102 TGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 5043 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||| | | | ||||||||| || || Sbjct 5042 AGGAATCCCTTCCTTATCCTGGATCTTGCTCTTTACATTCTCAATGGTGTCGCTAGACTC 4983 Query 44287 CACCTCCA 44294 ||||| || Sbjct 4982 CACCTACA 4975 Score = 95.1 bits (104), Expect = 9e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| || || ||| |||||| |||||||| || || Sbjct 5602 CATGCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTATAGTC 5543 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||||||||||||| || | Sbjct 5542 TGCAAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 5483 Query 44227 AGGCACACCT 44236 ||| | |||| Sbjct 5482 AGGGATACCT 5473 Score = 95.1 bits (104), Expect = 9e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||| || || ||| |||||| ||||||||||| || Sbjct 6063 CATGCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 6004 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| ||||||||| || | Sbjct 6003 TGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 5944 Query 44227 AGGCACACCT 44236 ||| | |||| Sbjct 5943 AGGAATACCT 5934 Score = 95.1 bits (104), Expect = 9e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | ||||||||| || || || |||||| ||||||||||| || Sbjct 6956 CATACCTCCACGCAGACGCAACACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 6897 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| ||||||||| || | Sbjct 6896 TGCAAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 6837 Query 44227 AGGCACACCT 44236 ||| | |||| Sbjct 6836 AGGAATACCT 6827 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||| || || || |||||| ||||||||||| || || Sbjct 7539 CCTCCACGCAGACGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCA 7480 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || ||||||||||| || |||||||||| ||||||||| || | || Sbjct 7479 AGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGG 7420 Query 44231 ACACCT 44236 | |||| Sbjct 7419 ATACCT 7414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| || || || |||||| ||||||||||| || Sbjct 6526 CATGCCTCCACGCAGACGCAGTACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 6467 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| ||||||||| || | Sbjct 6466 TGCAAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 6407 Query 44227 AGGCACACCT 44236 ||| | |||| Sbjct 6406 AGGAATACCT 6397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359919214710825