Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14182 167 6e-36 seq334 140 8e-28 >seq14182 Length=2243 Score = 167 bits (184), Expect = 6e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || ||||| || |||||||| ||| ||| Sbjct 788 CAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACACTGGAGGTGGAGAGCAGCGAC 729 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||||||||| || || || ||||| |||||||| Sbjct 728 ACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAG 669 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| |||||||| | ||||| || || || ||| || Sbjct 668 CGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGGCAGACTACAACATC 609 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || ||||||||||| || ||| Sbjct 608 CAGAAGGAGTCCACACTGCATCTGGTATTG 579 >seq334 Length=28022 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || ||||| || |||||||| ||| || Sbjct 27646 CAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCAGCGAT 27705 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 27706 ACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAGCAG 27765 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || || || || || ||| || Sbjct 27766 CGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAACATC 27825 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || ||||| ||||| || ||| Sbjct 27826 CAGAAGGAGTCCACACTTCATCTGGTGTTG 27855 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| ||||| || ||||||||||| || |||||||| || || ||||| |||||||| | Sbjct 27516 AGGCATCCCCCCTGACCAGCAACGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCG 27575 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || ||| |||| || || || ||||| ||||| || Sbjct 27576 CACTCTAGCAGACTACAACATCCAGAAGGAGTCTACACTCCATCTGGT 27623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203480964972650