Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq37257 113 1e-19 seq11518 109 1e-18 seq22762 102 2e-16 seq15391 100 6e-16 seq10873 98.7 2e-15 seq25216 96.9 7e-15 seq1079 91.5 3e-13 seq38880 84.2 5e-11 seq15688 84.2 5e-11 seq8393 84.2 5e-11 seq7270 84.2 5e-11 seq4098 84.2 5e-11 >seq37257 Length=1198 Score = 113 bits (124), Expect = 1e-19 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 319012 TAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 319071 || ||||| ||||| ||||||||||| ||| |||| || || | ||| |||||||||||| Sbjct 157 TAGCGCCACTGGATGTACTGGTTGGGGGTCTTGTCGAGGTGTTGCTCAATGTGGTGGAAA 216 Query 319072 GCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAAC 319118 |||||||||||||| || || | ||| || || ||||||||||| || Sbjct 217 GCATGCTGTGCCACATATGCCACACGGATGTTGGGATGCTTCCACAC 263 >seq11518 Length=9778 Score = 109 bits (120), Expect = 1e-18 Identities = 453/705 (64%), Gaps = 11/705 (2%) Strand=Plus/Plus Query 318981 GTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGT 319040 |||||| |||| ||||| ||||| | || ||||| |||| |||| ||||| | Sbjct 4616 GTCAAGT-TCTCCTTGTCCTCACCTCCGCTGTATCGCCAGCGGATGTACTCATTGGGAGA 4674 Query 319041 CATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCAT 319100 |||| ||||| | ||| | ||| ||||| || ||||| |||||||| ||| ||||| Sbjct 4675 TTTGTCCAGATGCTGCTCCAAGTGATGGAAGGCGTGCTGCGCCACGTACGCATACCGCAT 4734 Query 319101 ATTTGGATGCTTCCAAACACTACCGATGGT-GGCTTCCATTTGTCCCGTGAGCACCTTAA 319159 || | |||||||| | | | || | |||| | | | || || | || ||| | Sbjct 4735 GTTCTGGTGCTTCCAGATATTGCCAGTATCAGGCTCAGACTCG-CCAGTCAACATCTTGA 4793 Query 319160 TGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATA 319219 | ||||| || || || ||||| ||| | ||| | | |||| || || | Sbjct 4794 TCAGGGTCGACTTGCCGGCGCCGTTGGGGCCGAGACAACCCACACGGGAGGAGAGTGAGA 4853 Query 319220 CCTGGGCATT-CACG--TTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCA 319276 |||| | || | || |||| ||| || | ||||| || || | | || Sbjct 4854 TCTGGACCGAACAAGGCTTTTCAATGATCTTCTTACCAGTACCTGGGTAACCGTAGGTCA 4913 Query 319277 CACCGCGTAGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCT 319336 || | ||||| |||||| |||||| | | |||||| ||||| || || Sbjct 4914 CATTGTTCGCCTTCACGATGGCCTTGTCCTTGTTCTTCACACCCTCCAGGAAGCCAGGAG 4973 Query 319337 CGGGGAACTTCCACGTGGTCTTCGTC-TCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||||| | || || || | || | | | || | ||||| || | | ||| Sbjct 4974 GGGGGAAGATGAACTTGAGCT-CATCGTTGCTCAGCTCATAGTACTTCTTGGCAGCAGGA 5032 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 | || || |||||| || || || || ||| || || ||| || | ||| Sbjct 5033 CACTGCTCCACGAATTCCTGCAAGTTACCACGGTAGGTCACCAACTTGCGGGTC---TCG 5089 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || ||||| || ||||| ||| ||| ||||| || |||||||| |||||||||| | Sbjct 5090 TAGTGGATGATGTGCGTGCACACATTGTCCAGGAAGCCCGAGTCGTGGGACACAATCATG 5149 Query 319516 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAA 319575 | | || || |||||| | ||||| || ||| |||||| ||| Sbjct 5150 GAAGTCACAGTCTCCAGGTTGTTGAGGTACGTCTCCAGCCAAGCCACGTTCTTCACGTCC 5209 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | ||||| || |||||||| || |||| | | || ||| ||||||| || || || Sbjct 5210 ATGTGGTTAGTGGGCTCGTCGAGGAGCAAGATGTCAGCCTTCTGGAGCATGGCGCGGCCA 5269 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGG 319680 || || || ||||| ||||||||||||||||||| | | || ||| Sbjct 5270 AGGGCCAGCTTCATCTTCCACCCTCCGGAAAGAGCGGTGATGGGG 5314 >seq22762 Length=2761 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 299552 GTGGTACCATCGAATGTCTGCTGGATCGATTCCATCGCAAAGTTAGTGTAACGCCGGTAA 299611 |||||||||| || || || || || || ||||| ||||||||||||| || || || Sbjct 500 GTGGTACCATTCAAAGTTTGTTGAATAGACTCCATGGCAAAGTTAGTGTGGCGGCGATAG 441 Query 299612 ACCGCTTTaaaaaaaGTAATTTGAGGGTTACCTGTCAAGTAAACGTCCTGTGCACCATAT 299671 ||| |||| ||||||| |||| ||| |||||||| ||| | || || || |||||||| Sbjct 440 ACCACTTTGAAAAAAGAGATTTCAGGTTTACCTGTTAAGAAGACATCTTGAGCACCATAA 381 Query 299672 GATACCAGTTG 299682 | || ||||| Sbjct 380 GCGACGAGTTG 370 >seq15391 Length=6492 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 5334 TGCCCGCGTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCATGGGTTCGAG 5393 Query 165769 CCCCA 165773 ||||| Sbjct 5394 CCCCA 5398 >seq10873 Length=19966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 632 GCCCGCGTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCATGGGTTCGAGC 573 Query 165770 CCCA 165773 |||| Sbjct 572 CCCA 569 >seq25216 Length=4587 Score = 96.9 bits (106), Expect = 7e-15 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||||||| Sbjct 3650 TTGCCCGCGTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGCGGTCATGGGTTCGA 3709 Query 165768 GCCCCA 165773 |||||| Sbjct 3710 GCCCCA 3715 >seq1079 Length=27781 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 19864 GCCCGCGTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAAGGGTTCGAGC 19923 Query 165770 CCC 165772 ||| Sbjct 19924 CCC 19926 >seq38880 Length=10038 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| || |||||||||| ||||||| ||||||||| ||||||||||| Sbjct 7985 GCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAGC 7926 Query 165770 CCCA 165773 |||| Sbjct 7925 CCCA 7922 >seq15688 Length=4227 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| || |||||||||| ||||||| ||||||||| ||||||||||| Sbjct 761 GCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAGC 702 Query 165770 CCCA 165773 |||| Sbjct 701 CCCA 698 >seq8393 Length=6707 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| || |||||||||| ||||||| ||||||||| ||||||||||| Sbjct 1199 GCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAGC 1140 Query 165770 CCCA 165773 |||| Sbjct 1139 CCCA 1136 >seq7270 Length=11497 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| || |||||||||| ||||||| ||||||||| ||||||||||| Sbjct 613 GCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAGC 554 Query 165770 CCCA 165773 |||| Sbjct 553 CCCA 550 >seq4098 Length=24914 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| || |||||||||| ||||||| ||||||||| ||||||||||| Sbjct 24400 GCCCGGTTAGCTCAGTTGGCAGAGCGCCAGGCTTTTAACCTGGTGGTCATGGGTTCGAGC 24459 Query 165770 CCCA 165773 |||| Sbjct 24460 CCCA 24463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057278571731090