Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq30393 163 3e-35 >seq30393 Length=6106 Score = 163 bits (180), Expect = 3e-35 Identities = 494/742 (67%), Gaps = 35/742 (5%) Strand=Plus/Plus Query 16693 TTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGAT-ATATTCTCCATGAAATCAAAAGGAT 16751 |||||| ||||||||||| || || || | || | ||||| ||||| ||||| || |||| Sbjct 891 TTTTTCAAAAAAGTTAGTCTTTCCATCCA-AGCTGATATTTTCCATAAAATCGAATGGAT 949 Query 16752 TAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | | || ||| || |||| || |||| || | ||||| ||| || || |||| Sbjct 950 TCTTTGTTGCAAAGATAATAGAATATCCCAATTGTTTTAATAATCGATCTGCAACGAATT 1009 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || |||| ||||||||| ||||| || || | || || | | ||| | Sbjct 1010 CGATGTATTCCGACATTAATTTTTGATTCATACCAATCATCCGACATGGGATTGATTCTG 1069 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGG 16931 | | |||| || || | || ||||| | ||| || ||| | || | Sbjct 1070 TGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATATTATGGACTATTGTTTCTG 1129 Query 16932 ACGGTGTATGTTTAAGATGTTTAAACATCAG--ACATGCGAAATCGCAATGTAATCCCTC 16989 | ||| | ||| || | | ||| | || ||| ||||| || ||| ||||| || Sbjct 1130 AAGGTTTCCTTTTTAGGTAATGAAAAAG-AGTTACA-GCGAACTCTTGATGCAATCCTTC 1187 Query 16990 GTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 ||||| ||||| | || || ||||| | | ||||||||| |||||||| || Sbjct 1188 ATCTCT--TGATATCAACTCATTRGAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTC 1245 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 ||||||||||| || ||| || |||||||| | ||||| || || | |||||||| Sbjct 1246 AACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTCCACACACGCAAACGCT 1305 Query 17108 ATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCT 17167 ||||| ||||| ||| ||| || ||||| || |||||||| || |||| | ||| Sbjct 1306 ATTAAACGTTCTGCGAACGCCGTATCTTTATT---GATCCATTTTTGAGCCCAGTATGCT 1362 Query 17168 TTTTGCTTTATGC--AATCCATCGTTTCTATGGCCTTAAATA-ATTTCTCTTTTTCCTGT 17224 |||| || | | || || || | || || ||||||| || ||||| ||| Sbjct 1363 TTTT--TTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAGATGAATCTTT----TGT 1416 Query 17225 AGGTCGATTATATACGTATCG----ATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTC 17280 || |||| | || |||||| || | || ||||||||| | ||| || || Sbjct 1417 GCGT-GATTTTTTATGTATCGATCTATCAATAAGCTGTACATCTGACTGTGAATAGATTC 1475 Query 17281 CATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC--CACGTAG 17338 || | ||| | | ||||||| || ||||| | ||||| ||||| ||| || Sbjct 1476 GTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCACTTCATCAC-TAA 1534 Query 17339 AATCGTTC-CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATAT 17397 ||| ||| || |||||||| || || || || ||| | | ||||| || |||||||| Sbjct 1535 AAT--TTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAAGAATGCCAATAT 1592 Query 17398 A-TGCTTAATGAAATATTTTTC 17418 | ||||| |||||| ||| ||| Sbjct 1593 ATTGCTT-ATGAAAAATTGTTC 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517285255155240