Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq30393 181 1e-40 >seq30393 Length=6106 Score = 181 bits (200), Expect = 1e-40 Identities = 504/754 (67%), Gaps = 31/754 (4%) Strand=Plus/Plus Query 15917 TAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATA 15976 || |||| || | |||||| || |||||||| ||||| || || |||||||||||| Sbjct 877 TATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCCATCCAAGCTGATATTTTCCATA 936 Query 15977 AAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTA 16036 ||||| || ||||| | | || ||| || |||| || |||| || | | ||||| | Sbjct 937 AAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATATCCCAATTGTTTTAATAATCGA 996 Query 16037 TCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACC 16096 ||||| || ||||| || |||| ||||||| | ||| || || || | || Sbjct 997 TCTGCAACGAATTCGATGTATTCCGACATTAATTTTTGATTCATACCAATCATCCGACAT 1056 Query 16097 GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTG 16156 || | | || ||| | ||||| || ||| || || ||||| | ||||| | Sbjct 1057 GGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGACAGCTTCAGATACGATATTATGG 1116 Query 16157 GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC-GCGAAGTCGCA 16215 || |||||| || ||| | ||||||| | ||| | || || ||||| || Sbjct 1117 ACTATTGTTTCTGAAGGTTTCCTTTTTAGGTAATGAAA-AAGAGTTACAGCGAACTCTTG 1175 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 ||| | |||||| ||||| ||||| | || || ||||||| | || ||||| Sbjct 1176 ATGCAATCCTTCATCTCT--TGATATCAACTCATTRGAAAAAGAAAGACCGGGCATCAGA 1233 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 |||||||| || ||||| ||||| ||| || || || ||||| | ||||| || ||| Sbjct 1234 CCTCGTTTTTTCAACCAAAATATGGCACAGAAGGAACCAGAAAATAGAATACCTTCCACA 1293 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||| || ||||| ||||| ||| ||| | ||||||||| |||||||| || Sbjct 1294 CACGCAAACGCTATTAAACGTTCTGCGAACGCCGTATCTTTATT---GATCCATTTTTGA 1350 Query 16394 ACCCATTCGGCTTTTTGTTTTATAC--AATCCATCGTTTCTATGGCCTTAAACA-AT--T 16448 |||| | |||||| ||| | || || || || | || || ||||| | || Sbjct 1351 GCCCAGTATGCTTTT--TTTGAAACCGAAGGGATGGTGTGAATCGCATTAAATAGATGAA 1408 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA-- 16506 ||| || | | ||| | | |||| || ||| |||| ||| ||||||| ||||| Sbjct 1409 TCTTTTGTGCGTGATTTT---TTATGTATCGATCTATCAATAAGCTGTACA--TCTGACT 1463 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 ||| || || || | ||| | | || ||| ||||| || | ||||| || Sbjct 1464 GTGAATAGATTCGTTGTATTGTTGATAACTGTAAAAGGCACGAGCTTCTGGAATTTGCAC 1523 Query 16567 TTC--CACGTAAAATCGTTC-CGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 ||| ||| |||||| ||| || || || ||||| || || || || | || || Sbjct 1524 TTCATCAC-TAAAAT--TTCTGGCGAGATTTTCATTAACAATCCCATCGGACCCTGCGAA 1580 Query 16624 AAACGCCAATAT-GTGCTTAATGAAATATTTTTC 16656 || |||||||| ||||| |||||| ||| ||| Sbjct 1581 GAATGCCAATATATTGCTT-ATGAAAAATTGTTC 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511157139378760