Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq195 95.1 1e-14 seq8895 91.5 1e-13 >seq195 Length=29407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| |||||||| || || || ||||| || || ||| ||| | || Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||| ||||| ||||| ||||| |||| || ||| Sbjct 27057 GATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCAA 27116 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| || | || ||||| || |||||| ||||||| | ||| ||| ||||||||| Sbjct 27117 CAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAAT 27176 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| || | || | ||||| || ||| ||||||| Sbjct 27177 ATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTTAAGAGGAGG 27223 >seq8895 Length=8815 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | || || ||||||||| | || || ||||||||| Sbjct 664 AAAATTCAAGACAAAGAAGGAATCCCACCTGACCAACAAAGATTGATATTCGCGGGCAAA 723 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||||| || |||| |||||||| || || || ||||||||||||||| Sbjct 724 CAACTGGAAGACGGGCGGACACTGGCTGATTACAACATCCAAAAAGAATCTACTCTTCAC 783 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | ||| | || |||| ||||| Sbjct 784 CTCGTGCTTCGTCTACGTGGAGG 806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428125917656165