Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq21550 111 1e-19 seq12187 102 7e-17 seq19263 93.3 4e-14 seq18016 84.2 2e-11 >seq21550 Length=3044 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | ||||||| |||| |||||||||||||| ||||| ||||| ||| Sbjct 2665 CCCCCACGGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCC 2606 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| || |||||| | || ||||||||||||||| ||| Sbjct 2605 AGTGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGG 2546 Query 21069 ACGCCTTCCTTGTC 21082 | ||| || ||||| Sbjct 2545 ATGCCCTCTTTGTC 2532 >seq12187 Length=9842 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || || || ||||||||| Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| || || ||| |||| | | ||||||||| || Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || ||||| ||||| | | | | ||| || | |||| Sbjct 9740 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACC 9799 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATAT 21169 |||| || |||||||| ||||| | ||||| || || || Sbjct 9800 TCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq19263 Length=3464 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 |||||||||| || |||| |||| || ||||||||||||||||||||||| || ||| Sbjct 2711 CCTCGCAGCCGAAGTACCAAGTGCAGCGTTGACTCCTTTTGAATGTTATAGTCAGCAAGG 2770 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || | | ||||| || ||||| || ||| | || | || ||||||||| ||| | Sbjct 2771 GTACGTCCATCCTCAAGTTGTTTACCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATC 2830 Query 21072 CCTTCCTTGTC 21082 || ||||| || Sbjct 2831 CCCTCCTTATC 2841 >seq18016 Length=3756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| |||||||||||||| || || ||||| || Sbjct 91 CCTCCKCGGAGACGGAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCG 150 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 || || | ||||||| ||||| |||||||| | || || | ||||||||| Sbjct 151 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTC 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422052098092988