Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq21550 132 5e-26 seq12187 125 7e-24 seq26458 111 2e-19 seq8895 107 2e-18 seq27800 105 7e-18 seq13311 100 3e-16 seq22337 87.8 2e-12 seq1570 87.8 2e-12 seq4459 82.4 8e-11 >seq21550 Length=3044 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| | ||| | || || ||||| || || |||||||| | ||||| | | Sbjct 2439 ATGCAGCTTTTCATCAAGACACTCACCGGAAAGACCATCACTTTGGACGTGTGTCCTAGT 2498 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||||| |||||||||||||||||| |||||||| Sbjct 2499 GACACGATTGAGGAGTTAAAGGCGAAAATTCAGGACAAAGAGGGCATCCCCCCGGACCAG 2558 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| |||| ||||| || |||||||| || | |||||| || ||||||||| Sbjct 2559 CAGAGACTGATCTTTGCGGGAAAGCAGCTGGAGGATGGGCGCACACTGGCAGACTACAAC 2618 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||| |||||| |||| ||||| || ||| ||||| Sbjct 2619 ATCCAAAAGGAGTCCACCCTGCACCTGGTGCTGCGC 2654 >seq12187 Length=9842 Score = 125 bits (138), Expect = 7e-24 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || ||||||||||| ||||| || || |||||||| | || || || | | |||| Sbjct 9840 ATCTTCGTAAAAACCCTCACCGGGAAGACCATCACGCTGGAGGTGGAGAGCTCAGACACT 9781 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| | |||| || |||| || || ||||||||||| | |||||||| || Sbjct 9780 ATTGACAACG-TGAAGGCCAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCG 9722 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 | || | || || || |||||||| |||| |||||| || |||||||| ||||| Sbjct 9721 GTTGATTTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCCA 9662 Query 40875 GAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||| |||||||||| | ||| ||||| || | || ||| Sbjct 9661 GAAGGAGTCCACGCTGCACTTGGTGCTGCGCCTGCGTGGAGGC 9619 >seq26458 Length=3991 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 ||||||||||| | |||||||| || || || | |||||| || || ||||| |||| Sbjct 1967 GAGGGCATCCCTCCCGACCAGCAGCGCCTGATTTTCGCGGGGAAGCAACTGGAGGACGGT 2026 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||| ||| |||||||| |||||||||||| |||||||||| || ||| ||||| || Sbjct 2027 CGCACGCTCGCTGACTACAATATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTG 2086 Query 40909 AGGGGCGGC 40917 | || ||| Sbjct 2087 CGCGGTGGC 2095 >seq8895 Length=8815 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || |||||||| || || || ||||||||| | || || || | Sbjct 580 ATGCAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCT 639 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| ||||||| |||||||| || ||||| | ||||| Sbjct 640 GACACTATTGACAACG-TCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCA 698 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | |||||||||||| ||||| |||| ||| || || || ||||| Sbjct 699 ACAAAGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAA 758 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| || || | || || || || ||| Sbjct 759 CATCCAAAAAGAATCTACTCTTCACCTCGTG 789 >seq27800 Length=2063 Score = 105 bits (116), Expect = 7e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 ||| ||| || || | || |||||| ||| |||||| ||||||| || | |||||| Sbjct 455 TTCTGCGCTCGTCTTCTCGCTTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCGAGTTTC 514 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| || |||||| | ||||| ||||| || ||||| || || | |||||||||||| Sbjct 515 TGCGCTATCTTTTGGTTGAAGAAGCGCGGACTGATGCCGGGGCTCGCCTTCAGCAACGAG 574 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 |||||| | | |||||||| |||| | ||||| || Sbjct 575 CTCATCGCTCGCGACGAGGGGATGCACAGAGACTTCGC 612 >seq13311 Length=4779 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| || |||| ||||| ||||| || ||| | |||||||| || || |||| ||| Sbjct 4767 AAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTTATCTTTGCG 4708 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| ||||| || |||| |||||||| |||||||| |||||||||||| | || Sbjct 4707 GGCAAGCAGCTCGAGGACGGCCGCACCCTGGCTGACTACAATATCCAGAAGGAGTCTACC 4648 Query 40888 CTGCA 40892 ||||| Sbjct 4647 CTGCA 4643 >seq22337 Length=5046 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 117093 CCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCA 117152 |||||| |||| | |||||||||||||| |||||||| || || || ||||||||| | Sbjct 5046 CCATATATTGGTTGAAGAAACGCGGCCTGATGCCCGGACTTACCTTTTCCAACGAGCTAA 4987 Query 117153 TCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 | ||| | ||||| || |||| |||||||| || || |||| Sbjct 4986 TTTCCCGTGACGAAGGCTTGCACTGCGACTTCGCGTGCCTGCT 4944 >seq1570 Length=19022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || |||| || ||| |||||||||| | || || || | |||||| |||||| |||| Sbjct 12217 TGTTGGCTTTTGCGTGCGTCGAGGGCATATTTTTCTCCGCCAGTTTTTGCGCCATCTTTT 12158 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 | || || | || || |||||||| ||| | |||||||||||||||||| | | | Sbjct 12157 ACATGAAAAAGCAGGGGCTGATGCCCGGTCTGTCGTTCAGCAACGAGCTCATCGCGCGCG 12098 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTG 117189 |||| || |||| |||| || || || Sbjct 12097 ACGAAGGCATGCACCGCGATTTCGCTTG 12070 >seq4459 Length=9375 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || ||||| ||| |||||| |||| || |||| |||||| |||||||| | ||| Sbjct 2076 GCATTCGCATGCGTGGAGGGCATCTTTTTCTCGGCGAGTTTCTGTGCCATATTCTTGCTG 2135 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 || || || || | |||||||| || |||||||||||||||| ||| | | ||||| Sbjct 2136 AAAAAGCGGGGATTGATGCCCGGACTAGCTTTCAGCAACGAGCTTATCGCTCGTGACGAA 2195 Query 117167 GGTCTGCA 117174 || |||| Sbjct 2196 GGCATGCA 2203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514960025421680