Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq195 174 2e-38 seq8895 96.9 5e-15 >seq195 Length=29407 Score = 174 bits (192), Expect = 2e-38 Identities = 185/243 (76%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||||| || || ||||||| ||||||||||| | || ||||| | Sbjct 26997 ATGCAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCA 27056 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| |||| ||||| || ||||| ||||| || ||||| || ||| Sbjct 27057 GATACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCAA 27116 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||||||||||||||| || || | ||||||| | ||||| ||| Sbjct 27117 CAACGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAAT 27176 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTCA 124778 || |||||||||||||| || ||| | || || |||||| |||| |||||| ||||||| Sbjct 27177 ATACAAAAAGAATCAACCTTACATCTCGTGTTGCGTTTAAGAGGAGGTATT-TAAATTCA 27235 Query 124779 TAA 124781 || Sbjct 27236 AAA 27238 >seq8895 Length=8815 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| |||||||| || |||||||| |||||||| | || || || || ||| Sbjct 664 AAAATTCAAGACAAAGAAGGAATCCCACCTGACCAACAAAGATTGATATTCGCGGGCAAA 723 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || | || ||| | | ||||| || || ||||||||||| ||| | || Sbjct 724 CAACTGGAAGACGGGCGGACACTGGCTGATTACAACATCCAAAAAGAATCTACTCTTCAC 783 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTA 124770 | || | ||| |||| || ||| ||| Sbjct 784 CTCGTGCTTCGTCTACGTGGAGGTGTTA 811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755075977302400