Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq12187 109 5e-19 seq12650 98.7 9e-16 seq8895 95.1 1e-14 >seq12187 Length=9842 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || ||||||||| | || ||||| || || || ||||| || | Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||||| ||||| ||||| || || || | || | |||||||| |||||||| Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||| || ||| || || || | || | ||||| | |||||| ||| Sbjct 9740 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACC 9799 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 118734 || | || | || || ||||| || |||||||| || |||| Sbjct 9800 TCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq12650 Length=5101 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 ||| ||||||||| | || || ||||| || || ||||| || || ||||| ||| ||| Sbjct 753 CTGCTTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAAT 694 Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 ||| || || | |||| || || |||||||||| || | ||| | ||||| || Sbjct 693 TTTGGCCTTCACGTTGTCGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTTTTCCC 634 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| |||||||||||||| Sbjct 633 TGTGAGAGTTTTCACAAAAATCTGCAT 607 >seq8895 Length=8815 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| |||| | | ||| | ||| | ||||| |||||||| ||||||||||| Sbjct 807 ACCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGC 748 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || ||| || || || ||||| || ||| | || | | || || || || || Sbjct 747 CAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGG 688 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || || |||||| |||||| || || | || | ||||| | ||||| || Sbjct 687 GATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTAC 628 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||| | ||| | || || || || || ||||| ||||| |||||||||| Sbjct 627 CTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCATGG 578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433617622864156