Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq12187 116 4e-21 seq18016 102 9e-17 seq195 98.7 1e-15 seq13311 96.9 4e-15 seq17433 89.7 6e-13 seq26458 84.2 2e-11 seq8895 84.2 2e-11 >seq12187 Length=9842 Score = 116 bits (128), Expect = 4e-21 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||| |||||| || |||||||| || |||||||| ||| || Sbjct 9632 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCG 9691 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || | ||||||||||||| || | || |||||| Sbjct 9692 TCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTA 9751 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| | || | | ||| | | | ||||| |||| ||||| || | ||| Sbjct 9752 TCC-TGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTC---TCCACCTCCAGCGT 9807 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 43177 |||||| || || || || || ||||| ||||| Sbjct 9808 GATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq18016 Length=3756 Score = 102 bits (112), Expect = 9e-17 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||||| |||| ||| ||||||||| |||||||| ||||| Sbjct 91 CCTCCKCGGAGACGGAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCG 150 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||||| || |||| || |||||||| || ||||| ||||| ||||||||||| Sbjct 151 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTC 203 >seq195 Length=29407 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||||||||||||||| | ||| || || || ||||| |||||||||||| || Sbjct 27223 CCTCCTCTTAAACGCAACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCC 27164 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | |||| || | || || || || || || | ||| || ||||||| ||| Sbjct 27163 AATGTTCTCCCGTCTTCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGC 27104 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| ||| |||||| || | | | | ||| || ||||| || Sbjct 27103 ATTCCTTCCTTATCCTGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACG 27044 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || |||| || || | ||| |||||||| Sbjct 27043 TCGAGTGTTATAGTTTTACCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq13311 Length=4779 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || |||||||| | | ||| | |||||| |||| || |||||| || |||||||| Sbjct 4613 TACTGTCCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAG 4672 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 |||||||| || || |||| || |||||||| || || || || || ||||||||||| Sbjct 4673 TCAGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCA 4732 Query 43071 GCCGGCACGCTCTCCTTGTCC 43091 | || | | |||||||||| Sbjct 4733 GGGGGAATTCCCTCCTTGTCC 4753 >seq17433 Length=6093 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| |||||| || || ||||||||||| ||||| || | Sbjct 2934 ACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCC 2875 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||| || ||||||||||||||||| || || |||||||| || Sbjct 2874 GTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGATC 2833 >seq26458 Length=3991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || |||||||| ||||| || || || || Sbjct 2082 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGCGAGCGTGCGACCG 2023 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTC 43084 || || || ||||| || ||||| || || ||||||||||||| || | || ||| Sbjct 2022 TCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATGCCCTC 1967 >seq8895 Length=8815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| || |||||||||||||| |||||| |||| || || || || || |||||| Sbjct 770 TCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAAT 711 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || || ||||| | || | | || |||| | ||| |||| | |||| ||| Sbjct 710 ATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGT-CTTGAATTTTGGCCTTGA-CGT 653 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| || || || | |||||||| || || || ||||| | Sbjct 652 TGTCAATAGTGTCAGAACTC---TCTACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTT 596 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 595 TCACAAAGATCTGCAT 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571529954304040