Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq30393 199 4e-46 >seq30393 Length=6106 Score = 199 bits (220), Expect = 4e-46 Identities = 526/781 (67%), Gaps = 38/781 (5%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTG-ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTT 15983 || || ||||||| || ||| | |||||||| ||||| |||||||| || || || | Sbjct 852 ATCTGCCATAACTC-CAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCT 910 Query 15984 TTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTG----AACAATAGTAT 16039 |||| || || ||||||||||||||||| || ||||| |||| || ||| || Sbjct 911 TTCCATCCAAGCTGATATTTTCCATAAAATCGAATGGATTCTTTGTTGCAAAGATAATAG 970 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 || ||||||||| ||||||| ||| || || ||||| || || | |||| Sbjct 971 A-AT---ATCCCAATTGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATT 1026 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACA-GGGATTGCTTCTGTTAAAAAAtttttttC 16158 || | ||||| || || | | ||| ||||||| |||||| | ||| | |||||| Sbjct 1027 AATTTTTGATTCATACCAATCA-TCCGACATGGGATTGATTCTGTGATAAATTCTTTTTC 1085 Query 16159 TATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGGAGGGTTTAAT- 16216 | | || |||||| | |||| || | |||||| | | || ||||| | Sbjct 1086 GTTCTGGACAGCTTCAGATACGATAT----TA-TGGACTATTGTTTCTGAAGGTTTCCTT 1140 Query 16217 ---AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATT 16273 | || | ||| | | ||| || || |||||||||||| || || ||| Sbjct 1141 TTTAGGTAATGAAAAAGAGTTACAGCGAACTCTTGATGCAATCCTTCATCTCTTGATATC 1200 Query 16274 AACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCG 16333 ||||| || ||||| | |||||| ||||| || ||||||||||| | ||||||||| || Sbjct 1201 AACTCATTRGAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCA 1260 Query 16334 GCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCG 16393 || ||||||||||| | |||||||| || ||||| || | || || || || Sbjct 1261 CAGAAGGAACCAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCG 1320 Query 16394 TACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAG 16453 ||| ||| |||| | |||||||||| |||||| | |||||||| | ||| | Sbjct 1321 AACGCCGTATCTTTA---TTGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAA 1377 Query 16454 TTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTA 16513 ||| | | || |||||||||| || | | |||| | | || | || || | Sbjct 1378 GGGATGGTGTGAATCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGA 1437 Query 16514 TCTATTAGTAAACTATACATTTCTGA--ATGAATATTCTCCATTGCTAT--CTGAAAACC 16569 ||||| | ||| || |||| ||||| |||||| | | ||| ||| ||| ||| Sbjct 1438 TCTATCAATAAGCTGTACA--TCTGACTGTGAATA-GATTCGTTG-TATTGTTGATAACT 1493 Query 16570 ATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GAGTAAAACCTTTCT-GCTAAGTTT 16627 |||||| | |||||| | ||||| |||||| | ||||| ||||| || | ||| Sbjct 1494 GTAAAAGGCACGAGCTTCTGGAATTTGCACTTCATCACTAAAA--TTTCTGGCGAGATTT 1551 Query 16628 TCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTAT-GTGTTTAATAAAATTTTT 16686 || ||||| || |||||| |||| || || || | ||| || ||| |||| || | Sbjct 1552 TCATTAACAATCCCATCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTGT 1611 Query 16687 T 16687 | Sbjct 1612 T 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462279339119800