Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7861 122 2e-22 >seq7861 Length=6948 Score = 122 bits (134), Expect = 2e-22 Identities = 205/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 248866 ATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATT 248925 || || || ||||| || ||||| |||||||||| | ||||| || || || || ||| Sbjct 5074 ATCGACGGGAAGATTGTTGAACGTCCTCAGCACATGCTTATGCGGGTCGCCGTGGGCATT 5015 Query 248926 CACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATG 248985 ||| | || |||| ||| | || |||| ||| | ||||| || || ||| | Sbjct 5014 CACCAAGAGAACATCGAGCAAGCTATCAAGACATACCACCTTATGAGCGAGCGTTGGTTC 4955 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCA-ACAATCAGCTGAGCTCGTG 249044 ||||| || |||| ||||||||||||||||| | || || | |||||||||| || Sbjct 4954 ACACACGCGTCACCTACGCTCTTCAACGCCGGCA-CGCCACGCCCTCAGCTGAGCAGCTG 4896 Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 ||| | |||| ||| |||||||| | |||| || || || |||||||| || || Sbjct 4895 CTTCTTGATTGCAATGAAAGACGACAGTATCGAAGGTATCTACGACACGCTGAAGGAGTG 4836 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCG 249158 || ||||| || ||| || || ||||| ||| | || |||||||| Sbjct 4835 TGCTGCAATTTCAAAGAGCGCCGGAGGGATCGGCCTCAACATCCATAACATCCG 4782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073212751615424