Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq12187 118 8e-22 seq8895 100 2e-16 seq26458 91.5 1e-13 seq21550 84.2 2e-11 seq19263 82.4 6e-11 >seq12187 Length=9842 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||||||| ||||||||| || |||||||| ||| ||| |||| ||| Sbjct 9638 ACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGTGCGCCCGTCCTCC 9697 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || ||||||||||| ||||||||||| | |||||||| ||| | Sbjct 9698 AGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGA 9757 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||||||||||| || || ||||| Sbjct 9758 ATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACCTCCAGCGTGATGGTCTTC 9817 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 || || || || || || ||||| Sbjct 9818 CCGGTGAGGGTTTTTACGAAGAT 9840 >seq8895 Length=8815 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || || || |||||||| || |||| || |||| ||||||||||| || |||||| Sbjct 770 TCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAAT 711 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| | |||||||| || || | || || ||||| |||||| ||| || Sbjct 710 ATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTG 651 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| || ||| ||||||| ||| || ||||| || || || || |||||| Sbjct 650 TCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACA 591 Query 45326 AAGATTTGCATGTTG 45340 ||||| |||||| || Sbjct 590 AAGATCTGCATGGTG 576 >seq26458 Length=3991 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||||||| ||||||||| || |||||||| || |||| |||| ||| Sbjct 2076 ACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGCGAGCGTGCGACCGTCCTCC 2017 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTC 45237 ||||| || || ||||| |||| ||||| ||||||||||| | ||||| Sbjct 2016 AGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATGCCCTC 1967 >seq21550 Length=3044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| |||||| || ||||||||||| |||| ||| | || ||| Sbjct 2647 ACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 2588 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || |||| | ||| ||||| || || | ||||| |||||| | Sbjct 2587 AGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGA 2528 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| | | || | | |||| | | ||| |||| || || ||||| Sbjct 2527 ATTTTCGCCTTTAACTCCTCAATCGTGTCACTAGGACACACGTCCAAAGTGATGGTCTTT 2468 Query 45308 CCCGTCAGAGTCTT 45321 || || || ||||| Sbjct 2467 CCGGTGAGTGTCTT 2454 >seq19263 Length=3464 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||||||||| |||||| |||||||| ||||| || || | || || Sbjct 2725 TACCAAGTGCAGCGTTGACTCCTTTTGAATGTTATAGTCAGCAAGGGTACGTCCATCCTC 2784 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| ||||| || ||||| ||||| ||||| || || | |||||||| ||| Sbjct 2785 AAGTTGTTTACCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCCTTATCC 2842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394881430800103